FUSIM: a software tool for simulating fusion transcripts. - Andrew E. Bruno; Jeffrey C. Miecznikowski; Maochun Qin; Jianmin Wang 014; Song Liu (BMC Bioinform., 2013)

cnvCurator: an interactive visualization and editing tool for somatic copy number variations. - Lingnan Ma; Maochun Qin; Biao Liu; Qiang Hu; Lei Wei; Jianmin Wang 014; Song Liu (BMC Bioinform., 2015)

SCNVSim: somatic copy number variation and structure variation simulator. - Maochun Qin; Biao Liu; Jeffrey M. Conroy; Carl D. Morrison; Qiang Hu; Yubo Cheng; Mitsuko Murakami; Adekunle O. Odunsi; Candace S. Johnson; Lei Wei; Song Liu; Jianmin Wang 014 (BMC Bioinform., 2015)

Gene set analysis controlling for length bias in RNA-seq experiments. - Xing Ren; Qiang Hu; Song Liu; Jianmin Wang 014; Jeffrey C. Miecznikowski (BioData Min., 2017)