OPUS-Rota3: Improving Protein Side-Chain Modeling by Deep Neural Networks and Ensemble Methods. - Gang Xu; Qinghua Wang; Jianpeng Ma 004 (J. Chem. Inf. Model., 2020)

OPUS-X: an open-source toolkit for protein torsion angles, secondary structure, solvent accessibility, contact map predictions and 3D folding. - Gang Xu; Qinghua Wang; Jianpeng Ma 004 (Bioinform., 2021)

Integrating Priors into Domain Adaptation Based on Evidence Theory. - Ying Lv; Jianpeng Ma 004; Yiqiu Zhang; Gang Xu (CIKM, 2023)