Applications of particle filtering to communications: A review. - Petar M. Djuric; Jianqiu Zhang 002; Tadesse Ghirmai; Yufei Huang 001; Jayesh H. Kotecha (EUSIPCO, 2002)

Multiuser detection with particle filtering. - Jianqiu Zhang 002; Yufei Huang 001; Petar M. Djuric (EUSIPCO, 2002)

Joint Estimation and Decoding of Space-Time Trellis Codes. - Jianqiu Zhang 002; Petar M. Djuric (EURASIP J. Adv. Signal Process., 2002)

Joint velocity estimation and symbol detection in non-stationary fading channels by particle filtering. - Yufei Huang 001; Petar M. Djuric; Jianqiu (Michelle) Zhang (GLOBECOM, 2003)

Lower bounds on the variance of deterministic signal parameter estimators using Bayesian inference. - Yufei Huang 001; Jianqiu (Michelle) Zhang (ICASSP (6), 2003)

Detection with particle filtering in BLAST systems. - Yufei Huang 001; Jianqiu Zhang 002; Petar M. Djuric (ICC, 2003)

Performance analysis for coded CDMA systems. - Jianqiu Zhang 002 (IEEE Trans. Inf. Theory, 2003)

Turbo equalization using probabilistic data association. - Yufang Yin; Yufei Huang 001; Jianqiu (Michelle) Zhang (GLOBECOM, 2004)

Joint symbol detection and timing estimation with stochastic M-algorithm. - Yufang Yin; Yufei Huang 001; Jianqiu (Michelle) Zhang (ICASSP (4), 2004)

A generalized probabilistic data association multiuser detector. - Yufei Huang 001; Jianqiu (Michelle) Zhang (ISIT, 2004)

Belief-directed sequential probabilistic data association multiuser detector. - Yufei Huang 001; Yufang Yin; Jianqiu (Michelle) Zhang (ICASSP (3), 2005)

On the bounds of the non-coherent capacity of Gauss-Markov fading channels. - Jianqiu Zhang 002 (ICASSP (3), 2005)

Adaptive Blind Multiuser Detection over Flat Fast Fading Channels Using Particle Filtering. - Yufei Huang 001; Jianqiu (Michelle) Zhang; Isabel M. Tienda-Luna; Petar M. Djuric; Diego Pablo Ruiz Padillo (EURASIP J. Wirel. Commun. Netw., 2005)

Bayesian detection for BLAST. - Yufei Huang 001; Jianqiu (Michelle) Zhang; Petar M. Djuric (IEEE Trans. Signal Process., 2005)

Reverse Engineering Yeast Gene Regulatory Networks using Graphical Models. - Jiayin Wang; Yufei Huang 001; Maribel Sanchez; Yufeng Wang 002; Jianqiu (Michelle) Zhang (ICASSP (2), 2006)

Capacity Study of Non-Coherent MIMO Channels. - Jianqiu Zhang 002 (ISIT, 2006)

Non-asymptotic Capacity Lower Bound for Non-coherent SIMO Channels with Memory. - Jianqiu Zhang 002 (ISIT, 2006)

Bayesian Inference of Genetic Regulatory Networks from Time Series Microarray Data Using Dynamic Bayesian Networks. - Yufei Huang 001; Jianyin Wang; Jianqiu Zhang 002; Maribel Sanchez; Yufeng Wang 002 (J. Multim., 2007)

Bayesian peak detection for Pro-TOF MS MALDI data. - Jianqiu Zhang 002; Honghui Wang; Anthony Suffredini; Denise Gonzales; Elias Gonzalez; Yufei Huang 001; Xiaobo Zhou 001 (ICASSP, 2008)

Iterative correction of suppressed peptide profiles from FTMS measurements. - Xuepo Ma; Travis J. Hestilow; Jian Cui; Jianqiu Zhang 002 (BIBM, 2010)

An Iterated Conditional Modes solution for sparse Bayesian factor modeling of transcriptional regulatory networks. - Jia Meng 001; Jianqiu Zhang 002; Yidong Chen 002; Yufei Huang 001 (BIBM, 2010)

An iterated conditional mode solution for Bayesian factor modeling of transcriptional regulatory networks. - Jia Meng 001; Jianqiu Zhang 002; Yidong Chen 002; Yufei Huang 001 (GENSiPS, 2010)

BPDA - A Bayesian peptide detection algorithm for mass spectrometry. - Youting Sun; Jianqiu Zhang 002; Ulisses M. Braga-Neto; Edward R. Dougherty (BMC Bioinform., 2010)

Uncovering Transcriptional Regulatory Networks by Sparse Bayesian Factor Model. - Jia Meng 001; Jianqiu (Michelle) Zhang; Yuan (Alan) Qi; Yidong Chen 002; Yufei Huang 001 (EURASIP J. Adv. Signal Process., 2010)

Bayesian peptide peak detection for high resolution TOF mass spectrometry. - Jianqiu Zhang 002; Xiaobo Zhou 001; Honghui Wang; Anthony Suffredini; Lin Zhang 015; Yufei Huang 001; Stephen T. C. Wong (IEEE Trans. Signal Process., 2010)

Improved Quantification of Labeled LC-MS. - Long Chen 001; Konstantinos Petritis; Tony Tegeler; Brianne Petritis; William E. Haskins; Jianqiu (Michelle) Zhang (BIBM, 2011)

A parallel programming framework with Markovian messaging for LC-MS peptide detection. - Zhenghao Zhang; Youting Sun; Ulisses M. Braga-Neto; Edward R. Dougherty; Jianqiu Zhang 002 (BIBM Workshops, 2011)

Joint corresponding feature identification and alignment for multiple LC/MS replicates. - Jian Cui; Xuepo Ma; Jianqiu (Michelle) Zhang (GENSiPS, 2011)

Uncover cooperative gene regulations by microRNAs and transcription factors in glioblastoma using a nonnegative hybrid factor model. - Jia Meng 001; Hung-I Chen 001; Jianqiu Zhang 002; Yidong Chen 002; Yufei Huang 001 (ICASSP, 2011)

SCFIA: A Statistical Corresponding Feature Identification Algorithm for LC/MS. - Jian Cui; Xuepo Ma; Long Chen 001; Jianqiu Zhang 002 (BMC Bioinform., 2011)

MRCQuant- an accurate LC/MS relative isotopic quantification algorithm on TOF instruments. - William H. Haskins; Konstantinos Petritis; Jianqiu Zhang 002 (BMC Bioinform., 2011)

An SILAC quantification algorithm for LC-FTMS. - Jian Cui; Xuepo Ma; Xiaolin Zhang; William Haskins; Jianqiu (Michelle) Zhang (GENSiPS, 2012)

BPDA2d - a 2D global optimization-based Bayesian peptide detection algorithm for liquid chromatograph-mass spectrometry. - Youting Sun; Jianqiu Zhang 002; Ulisses M. Braga-Neto; Edward R. Dougherty (Bioinform., 2012)

PeakLink: a new peptide peak linking method in LC-MS/MS using wavelet and SVM. - Mehrab Ghanat Bari; Xuepo Ma; Jianqiu Zhang 002 (Bioinform., 2014)

Early disease correlated protein detection using early response index (ERI). - Sirajul Salekin; Mehrab Ghanat Bari; Itay Raphael; Thomas G. Forsthuber; Jianqiu (Michelle) Zhang (BHI, 2016)

A deep learning model for predicting transcription factor binding location at single nucleotide resolution. - Sirajul Salekin; Jianqiu (Michelle) Zhang; Yufei Huang 001 (BHI, 2017)

Prediction of fatigue-related driver performance from EEG data by deep Riemannian model. - Mehdi Hajinoroozi; Jianqiu (Michelle) Zhang; Yufei Huang 001 (EMBC, 2017)

Driver's fatigue prediction by deep covariance learning from EEG. - Mehdi Hajinoroozi; Jianqiu (Michelle) Zhang; Yufei Huang 001 (SMC, 2017)

Early response index: a statistic to discover potential early stage disease biomarkers. - Sirajul Salekin; Mehrab Ghanat Bari; Itay Raphael; Thomas G. Forsthuber; Jianqiu (Michelle) Zhang (BMC Bioinform., 2017)

Base-pair resolution detection of transcription factor binding site by deep deconvolutional network. - Sirajul Salekin; Jianqiu (Michelle) Zhang; Yufei Huang 001 (Bioinform., 2018)

Deep learning tackles single-cell analysis - a survey of deep learning for scRNA-seq analysis. - Mario Flores; Zhentao Liu; Tinghe Zhang; Md Musaddaqui Hasib; Yu-Chiao Chiu; Zhenqing Ye; Karla Paniagua; Sumin Jo; Jianqiu Zhang 002; Shou-Jiang Gao; Yu-Fang Jin; Yidong Chen 002; et al. (Briefings Bioinform., 2022)

MetaphorPrompt - An Analogical Reasoning Approach for Extracting Causal Links from Biological Text. - Parth Patel; Yu-Chiao Chiu; Yufei Huang 001; Jianqiu Zhang 002 (BCB, 2024)

ReguloGPT: Harnessing GPT for End-to-End Knowledge Graph Construction of Molecular Regulatory Pathways. - Xidong Wu; Sumin Jo; Yiming Zeng 014; Arun Das 001; Tinghe Zhang; Parth Patel; Yuanjing Wei; Lei Li; Shou-Jiang Gao; Jianqiu Zhang 002; Dexter Pratt; Yu-Chiao Chiu; et al. (BHI, 2024)