Parallel conjugate gradient-particle swarm optimization and the parameters design based on the polygonal fuzzy neural network. - Guijun Wang; Jiansi Gao (J. Intell. Fuzzy Syst., 2019)

PrioriTree: a utility for improving phylodynamic analyses in BEAST. - Jiansi Gao; Michael R. May; Bruce Rannala; Brian R. Moore (Bioinform., 2023)

PhyloVAE: Unsupervised Learning of Phylogenetic Trees via Variational Autoencoders. - Tianyu Xie 001; Harry Richman; Jiansi Gao; Frederick A. Matsen IV; Cheng Zhang (ICLR, 2025)