LncRNA-ID: Long non-coding RNA IDentification using balanced random forests. - Rujira Achawanantakun; Jiao Chen 002; Yanni Sun; Yuan Zhang (Bioinform., 2015)

Cap-seq reveals complicated miRNA transcriptional mechanisms in C. elegans and mouse. - Jiao Chen 002; Dongxiao Zhu; Yanni Sun (Quant. Biol., 2017)

De novo haplotype reconstruction in viral quasispecies using paired-end read guided path finding. - Jiao Chen 002; Yingchao Zhao 001; Yanni Sun (Bioinform., 2018)

TAR-VIR: a pipeline for TARgeted VIRal strain reconstruction from metagenomic data. - Jiao Chen 002; Jiating Huang; Yanni Sun (BMC Bioinform., 2019)

A binning tool to reconstruct viral haplotypes from assembled contigs. - Jiao Chen 002; Jiayu Shang; Jianrong Wang; Yanni Sun (BMC Bioinform., 2019)

Improving the sensitivity of long read overlap detection using grouped short k-mer matches. - Nan Du 003; Jiao Chen 002; Yanni Sun (BMC Genom., 2019)