THUIR at TREC 2004: Genomics Track. - Jiao Li 001; Xian Zhang 006; Min Zhang 006; Xiaoyan Zhu 001 (TREC, 2004)

Learning Domain-Specific Knowledge from Context–THUIR at TREC 2005 Genomics Track. - Jiao Li 001; Xian Zhang 006; Yu Hao 001; Minlie Huang; Xiaoyan Zhu 001 (TREC, 2005)

Automatic Extraction of Genomic Glossary Triggered by Query. - Jiao Li 001; Xiaoyan Zhu 001 (BioDM, 2006)

An Ontology-Based Mining System for Competitive Intelligence in Neuroscience. - Jiao Li 001; Minlie Huang; Xiaoyan Zhu 001 (WImBI, 2006)

Mining disease-specific molecular association profiles from biomedical literature: a case study. - Jiao Li 001; Xiaoyan Zhu 001; Jake Yue Chen (SAC, 2008)

Construct anticancer drug-drug correlation network. - Jiao Li 001; Pamela Crowell; Jake Yue Chen (SAC, 2009)

Building Disease-Specific Drug-Protein Connectivity Maps from Molecular Interaction Networks and PubMed Abstracts. - Jiao Li 001; Xiaoyan Zhu 001; Jake Yue Chen (PLoS Comput. Biol., 2009)

Discovering breast cancer drug candidates from biomedical literature. - Jiao Li 001; Xiaoyan Zhu 001; Jake Yue Chen (Int. J. Data Min. Bioinform., 2010)

A new method for computational drug repositioning using drug pairwise similarity. - Jiao Li 001; Zhiyong Lu (BIBM, 2012)

Improving Online Access to Drug-Related Information. - Jiao Li 001; Ritu Khare; Zhiyong Lu (HISB, 2012)

A Network Approach for Computational Drug Repositioning. - Jiao Li 001; Zhiyong Lu (HISB, 2012)

Linking multiple disease-related resources through UMLS. - Aurélie Névéol; Jiao Li 001; Zhiyong Lu (IHI, 2012)

Systematic identification of pharmacogenomics information from clinical trials. - Jiao Li 001; Zhiyong Lu (J. Biomed. Informatics, 2012)

Automatic identification and normalization of dosage forms in drug monographs. - Jiao Li 001; Zhiyong Lu (BMC Medical Informatics Decis. Mak., 2012)

Toward Creating a Gold Standard of Drug Indications from FDA Drug Labels. - Ritu Khare; Jiao Li 001; Zhiyong Lu (ICHI, 2013)

Pathway-based drug repositioning using causal inference. - Jiao Li 001; Zhiyong Lu (BMC Bioinform., 2013)

LabeledIn: Cataloging labeled indications for human drugs. - Ritu Khare; Jiao Li 001; Zhiyong Lu (J. Biomed. Informatics, 2014)

Consumer Health Information Needs and Question Classification: Analysis of Hypertension Related Questions Asked by Consumers on a Chinese Health Website. - Haihong Guo; Jiao Li 001; Tao Dai (MedInfo, 2015)

Facilitating Full-text Access to Biomedical Literature Using Open Access Resources. - Hongyu Kang; Zhen Hou; Jiao Li 001 (MedInfo, 2015)

Characterizing Health Information for Different Target Audiences. - Yueping Sun; Zhen Hou; Li Hou; Jiao Li 001 (MedInfo, 2015)

Data Curation: Improving Environmental Health Data Quality. - Lin Yang; Jiao Li 001; Li Hou; Qing Qian (MedInfo, 2015)

A Question Answering System Built on Domain Knowledge Base. - Yicheng Liu; Yu Hao 001; Xiaoyan Zhu 001; Jiao Li 001 (WAIM, 2015)

An Integrative Approach for Discovery of New Uses of Existing Drugs. - Jiao Li 001; Zhiyong Lu (Data Sci. J., 2015)

A survey of current trends in computational drug repositioning. - Jiao Li 001; Si Zheng 001; Bin Chen; Atul J. Butte; S. Joshua Swamidass; Zhiyong Lu (Briefings Bioinform., 2016)

BioCreative V CDR task corpus: a resource for chemical disease relation extraction. - Jiao Li 001; Yueping Sun; Robin J. Johnson; Daniela Sciaky; Chih-Hsuan Wei; Robert Leaman; Allan Peter Davis; Carolyn J. Mattingly; Thomas C. Wiegers; Zhiyong Lu (Database J. Biol. Databases Curation, 2016)

Assessing the state of the art in biomedical relation extraction: overview of the BioCreative V chemical-disease relation (CDR) task. - Chih-Hsuan Wei; Yifan Peng 002; Robert Leaman; Allan Peter Davis; Carolyn J. Mattingly; Jiao Li 001; Thomas C. Wiegers; Zhiyong Lu (Database J. Biol. Databases Curation, 2016)

Automatically Identifying Topics of Consumer Health Questions in Chinese. - Haihong Guo; Xu Na; Jiao Li 001 (MedInfo, 2017)

Identifying Chemical-Disease Relationship in Biomedical Text Using a Multiple Kernel Learning-Boosting Method. - Yueping Sun; Yu Zhang; Jiao Li 001 (MedInfo, 2017)

Identifying Scientific Project-generated Data Citation from Full-text Articles: An Investigation of TCGA Data Citation. - Jiao Li 001; Si Zheng 001; Hongyu Kang; Zhen Hou; Qing Qian (J. Data Inf. Sci., 2017)

A Real-Time Professional Content Recommendation System for Healthcare Providers' Knowledge Acquisition. - Lu Qin 005; Xiaowei Xu; Jiao Li 001 (BigData Congress, 2018)

Developing a Chinese Food Nutrient Data Analysis System for Precise Dietary Intake Management. - Xiaowei Xu; Li Hou; Zhen Guo; Ju Wang; Jiao Li 001 (BigData Congress, 2018)

ImageSem at ImageCLEF 2018 Caption Task: Image Retrieval and Transfer Learning. - Xuwen Wang; Yu Zhang; Zhen Guo; Jiao Li 001 (CLEF (Working Notes), 2018)

Identifying Adverse Drug Reactions of Hypolipidemic Drugs from Chinese Adverse Event Reports. - Yu Zhang; Xuwen Wang; Liu Shen; Zhen Hou; Zhen Guo; Jiao Li 001 (ICHI Workshops, 2018)

Building a Controlled Vocabulary for Standardizing Precision Medicine Terms. - Meng Wu; Yan Liu; Hongyu Kang; Si Zheng 001; Jiao Li 001; Li Hou (CoRR, 2018)

Qcorp: an annotated classification corpus of Chinese health questions. - Haihong Guo; Xu Na; Jiao Li 001 (BMC Medical Informatics Decis. Mak., 2018)

Mining and standardizing chinese consumer health terms. - Li Hou; Hongyu Kang; Yan Liu; Luqi Li; Jiao Li 001 (BMC Medical Informatics Decis. Mak., 2018)

A Computational Framework Towards Medical Image Explanation. - Xuwen Wang; Yu Zhang; Zhen Guo; Jiao Li 001 (KR4HC/ProHealth/TEAAM@AIME, 2019)

ImageSem at ImageCLEFmed Caption 2019 Task: a Two-stage Medical Concept Detection Strategy. - Zhen Guo; Xuwen Wang; Yu Zhang; Jiao Li 001 (CLEF (Working Notes), 2019)

Medical Image Labelling and Semantic Understanding for Clinical Applications. - Xuwen Wang; Zhen Guo; Yu Zhang; Jiao Li 001 (CLEF, 2019)

RCorp: a Resource for Chemical Disease Semantic Extration in Chinese. - Yueping Sun; Li Hou; Lu Qin 005; Jiao Li 001; Qing Qian (ICHI, 2019)

TestIME: A Tool for Testing Chinese Input Method Engines in Electronic Medical Record Entry Task. - Feihong Yang; Jiao Li 001 (ICHI, 2019)

A Cross-Lingual Effort Towards Managing English-Chinese Cancer Education Resources. - Hetong Ma; Jiansong Ren; Xuwen Wang; An Fang; Jiao Li 001; Qing Qian (MedInfo, 2019)

Mining Pharmaceutical Product Data Related to Payment Pattern from the CMS Open Payments Data: A Case Study in Thoracic Surgery. - Xu Na; Haihong Guo; Sizhu Wu; Jiao Li 001 (MedInfo, 2019)

A Graphical Representation Model for Electronic Health Records: A Preliminary Study. - Lin Yang; Xiaoshuo Huang; Li Hou; Qing Qian; Jiao Li 001 (MedInfo, 2019)

Identifying RNA Biomarkers for Oesophageal Squamous Cell Carcinoma. - Si Zheng 001; Jiagen Li; Li Hou; Jiao Li 001 (MedInfo, 2019)

RCorp: a resource for chemical disease semantic extraction in Chinese. - Yueping Sun; Li Hou; Lu Qin 005; Yan Liu; Jiao Li 001; Qing Qian (BMC Medical Informatics Decis. Mak., 2019)

TestIME: an application for evaluating the efficiency of Chinese input method engines in electronic medical record entry task. - Feihong Yang; Haihong Guo; Jiao Li 001 (BMC Medical Informatics Decis. Mak., 2019)

ECCParaCorp: a cross-lingual parallel corpus towards cancer education, dissemination and application. - Hetong Ma; Feihong Yang; Jiansong Ren; Ni Li; Min Dai; Xuwen Wang; An Fang; Jiao Li 001; Qing Qian; Jie He (BMC Medical Informatics Decis. Mak., 2020)

Identifying diagnosis evidence of cardiogenic stroke from Chinese echocardiograph reports. - Lu Qin 005; Xiaowei Xu; Lingling Ding; Zixiao Li; Jiao Li 001 (BMC Medical Informatics Decis. Mak., 2020)

CurrMG: A Curriculum Learning Approach for Graph Based Molecular Property Prediction. - Yaowen Gu; Si Zheng 001; Jiao Li 001 (BIBM, 2021)

ImageSem Group at ImageCLEFmed Caption 2021 Task: Exploring the Clinical Significance of the Textual Descriptions Derived from Medical Images. - Xuwen Wang; Zhen Guo; Chunyuan Xu; Lianglong Sun; Jiao Li 001 (CLEF (Working Notes), 2021)

Developing an Interpretable Etiology Classification Model for Ischemic Stroke Based on Chinese Clinical Practice Guideline. - Xiaowei Xu; Lu Qin 005; Zixiao Li; Jiao Li 001 (ICHI, 2021)

KGBReF: A Knowledge Graph based Biomedical Relation Extraction Framework. - Yueping Sun; Zhisheng Huang; Jiao Li 001; Zidu Xu; Li Hou (ISAIMS, 2021)

Annotating Free-Texts in EHRs Towards a Reusable and Machine-Actionable Health Data Resource. - Jiayang Wang; Lin Yang; Xiaoshuo Huang; Jiao Li 001 (MedInfo, 2021)

Developing a Siamese Network for UTIs Risk Prediction in Immobile Patients Undergoing Stroke. - Zidu Xu; Chen Zhu; Yaowen Gu; Si Zheng 001; Xiangyu Sun; Jing Cao; Xinjuan Wu; Jiao Li 001 (MedInfo, 2021)

COVID term: a bilingual terminology for COVID-19. - Hetong Ma; Liu Shen; Haixia Sun; Zidu Xu; Li Hou; Sizhu Wu; An Fang; Jiao Li 001; Qing Qian (BMC Medical Informatics Decis. Mak., 2021)

Transformers-sklearn: a toolkit for medical language understanding with transformer-based models. - Feihong Yang; Xuwen Wang; Hetong Ma; Jiao Li 001 (BMC Medical Informatics Decis. Mak., 2021)

A deep learning approach for identifying biomedical breakthrough discoveries using context analysis. - Xue Wang; Xuemei Yang; Jian Du; Xuwen Wang; Jiao Li 001; Xiaoli Tang (Scientometrics, 2021)

MilGNet: A Multi-instance Learning-based Heterogeneous Graph Network for Drug repositioning. - Yaowen Gu; Si Zheng 001; Bowen Zhang; Hongyu Kang; Jiao Li 001 (BIBM, 2022)

ImageSem Group at ImageCLEFmedical Caption 2022 task: Generating Medical Image Descriptions based on Vision-Language Pre-training. - Xuwen Wang; Jiao Li 001 (CLEF (Working Notes), 2022)

An efficient curriculum learning-based strategy for molecular graph learning. - Yaowen Gu; Si Zheng 001; Zidu Xu; Qijin Yin; Liang Li; Jiao Li 001 (Briefings Bioinform., 2022)

REDDA: Integrating multiple biological relations to heterogeneous graph neural network for drug-disease association prediction. - Yaowen Gu; Si Zheng 001; Qijin Yin; Rui Jiang 001; Jiao Li 001 (Comput. Biol. Medicine, 2022)

Exploring relationship between emotion and probiotics with knowledge graphs. - Yueping Sun; Jiao Li 001; Zidu Xu; Yan Liu; Li Hou; Zhisheng Huang (Health Inf. Sci. Syst., 2022)

CODER: Knowledge-infused cross-lingual medical term embedding for term normalization. - Zheng Yuan 002; Zhengyun Zhao; Haixia Sun; Jiao Li 001; Fei Wang 001; Sheng Yu 002 (J. Biomed. Informatics, 2022)

Learning dynamic treatment strategies for coronary heart diseases by artificial intelligence: real-world data-driven study. - Haihong Guo; Jiao Li 001; Hongyan Liu 002; Jun He 008 (BMC Medical Informatics Decis. Mak., 2022)

Identifying stroke diagnosis-related features from medical imaging reports to improve clinical decision-making support. - Xiaowei Xu; Lu Qin 005; Lingling Ding; Chunjuan Wang; Meng Wang; Zixiao Li; Jiao Li 001 (BMC Medical Informatics Decis. Mak., 2022)

Comma: A Collaborative Medical Text Annotation Platform. - Hetong Ma; Xiaowei Xu; Xuwen Wang; Zhen Guo; Jiao Li 001 (ICHI, 2023)

ElCombo: Knowledge-based Personalized Meal Recommendation System for Chinese Community-dwelling Elders. - Zidu Xu; Jiao Li 001; Maxim Topaz (ICHI, 2023)

Identifying stroke-related quantified evidence from electronic health records in real-world studies. - Lin Yang; Xiaoshuo Huang; Jiayang Wang; Xin Yang; Lingling Ding; Zixiao Li; Jiao Li 001 (Artif. Intell. Medicine, 2023)

MGREL: A multi-graph representation learning-based ensemble learning method for gene-disease association prediction. - Ziyang Wang; Yaowen Gu; Si Zheng 001; Lin Yang; Jiao Li 001 (Comput. Biol. Medicine, 2023)

Automated Concept Indexing for Health Measurement Scale Items through Prompt Learning with Pre-trained Language Models. - Jie Hao; Zhen Guo; Qinglong Peng; Meng Zhang; Liu Shen; Shan Cong; Jiao Li 001; Haixia Sun (ICHI, 2024)

Machine learning-enabled virtual screening indicates the anti-tuberculosis activity of aldoxorubicin and quarfloxin with verification by molecular docking, molecular dynamics simulations, and biological evaluations. - Si Zheng 001; Yaowen Gu; Yuzhen Gu; Yelin Zhao; Liang Li; Min Wang; Rui Jiang 001; Xia Yu; Ting Chen; Jiao Li 001 (Briefings Bioinform., 2024)

Deep multiple instance learning on heterogeneous graph for drug-disease association prediction. - Yaowen Gu; Si Zheng 001; Bowen Zhang; Hongyu Kang; Rui Jiang 001; Jiao Li 001 (Comput. Biol. Medicine, 2025)

MedScaleRE-PF: a prompt-based framework with retrieval-augmented generation, chain-of-thought, and self-verification for scale-specific relation extraction in Chinese medical literature. - Zhenli Chen; Jie Hao; Haixia Sun; Liang Zhao; Jiao Li 001; Qing Qian; Qinglong Peng; Xuwen Wang; Shan Cong; Liu Shen; Zhen Guo; Siyue Pu; et al. (Inf. Process. Manag., 2025)

Classification of Chronic Dizziness Using Large Language Models. - Xiaowei Xu; Ruixuan Jiang; Si Zheng 001; Min Wang; Yi Ju; Jiao Li 001 (J. Heal. Informatics Res., 2025)