NONCODEv4: exploring the world of long non-coding RNA genes. - Chaoyong Xie; Jiao Yuan; Hui Li 038; Ming Li; Guoguang Zhao; Dechao Bu; Weimin Zhu; Wei Wu 025; Runsheng Chen; Yi Zhao 013 (Nucleic Acids Res., 2014)

NPInter v2.0: an updated database of ncRNA interactions. - Jiao Yuan; Wei Wu 025; Chaoyong Xie; Guoguang Zhao; Yi Zhao 013; Runsheng Chen (Nucleic Acids Res., 2014)

NPInter v3.0: an upgraded database of noncoding RNA-associated interactions. - Yajing Hao 001; Wei Wu 025; Hui Li 038; Jiao Yuan; Jianjun Luo 001; Yi Zhao 013; Runsheng Chen (Database J. Biol. Databases Curation, 2016)

Computational identification of piRNA targets on mouse mRNAs. - Jiao Yuan; Peng Zhang 047; Ya Cui; Jiajia Wang; Geir Skogerbø; Da-Wei Huang; Runsheng Chen; Shunmin He (Bioinform., 2016)

Analysis and Optimization of Bottlenecks via Simulation. - Jiao Yuan; Runtong Zhang (IEEM, 2018)

A Mining Frequent Itemsets Algorithm in Stream Data Based on Sliding Time Decay Window. - Xin Lu; Shaonan Jin; Xun Wang; Jiao Yuan; Kun Fu; Ke Yang (AIPR, 2020)

Graph domain adaptation-based framework for gene expression enhancement and cell type identification in large-scale spatially resolved transcriptomics. - Rongbo Shen; Meiling Cheng; Wencang Wang; Qi Fan; Huan Yan; Jiayue Wen; Zhiyuan Yuan; Jianhua Yao 001; Yixue Li; Jiao Yuan (Briefings Bioinform., 2024)

A data-intelligence-intensive bioinformatics copilot system for large-scale omics research and scientific insights. - Yang Liu; Rongbo Shen; Lu Zhou; Qingyu Xiao; Jiao Yuan; Yixue Li (Briefings Bioinform., 2025)