A New Parallel Method of Smith-Waterman Algorithm on a Heterogeneous Platform. - Bo Chen; Yun Xu; Jiaoyun Yang; Haitao Jiang (ICA3PP (1), 2010)

A Faster Haplotyping Algorithm Based on Block Partition, and Greedy Ligation Strategy. - Xiaohui Yao; Yun Xu; Jiaoyun Yang (ICIC (3), 2011)

An improved voting algorithm for planted (l, d) motif search. - Yun Xu; Jiaoyun Yang; YuZhong Zhao; Yi Shang (Inf. Sci., 2013)

FNphasing: A Novel Fast Heuristic Algorithm for Haplotype Phasing Based on Flow Network Model. - Jiaoyun Yang; Yun Xu; Xiaohui Yao; Guoliang Chen 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2013)

A New Progressive Algorithm for a Multiple Longest Common Subsequences Problem and Its Efficient Parallelization. - Jiaoyun Yang; Yun Xu; Guangzhong Sun; Yi Shang (IEEE Trans. Parallel Distributed Syst., 2013)

A Space-Bounded Anytime Algorithm for the Multiple Longest Common Subsequence Problem. - Jiaoyun Yang; Yun Xu; Yi Shang; Guoliang Chen 001 (IEEE Trans. Knowl. Data Eng., 2014)

BitMapper: an efficient all-mapper based on bit-vector computing. - Haoyu Cheng; Huaipan Jiang; Jiaoyun Yang; Yun Xu; Yi Shang (BMC Bioinform., 2015)

Nonlinear dimensionality reduction methods for synthetic biology biobricks' visualization. - Jiaoyun Yang; Haipeng Wang; Huitong Ding; Ning An 001; Gil Alterovitz (BMC Bioinform., 2017)

Biobrick chain recommendations for genetic circuit design. - Jiaoyun Yang; Song Yu; Bowen Gong; Ning An 001; Gil Alterovitz (Comput. Biol. Medicine, 2017)

A Knowledge Graph for Eldercare: Constructing a Domain Entity Graph with Guidelines. - You Duan; Pin Ji; Liuqi Jin; Anning Zou; Jiaoyun Yang; Hong Xie; Ning An 001 (HCI (27), 2018)

Extracting causal relations from the literature with word vector mapping. - Ning An 001; Yongbo Xiao; Jing Yuan; Jiaoyun Yang; Gil Alterovitz (Comput. Biol. Medicine, 2019)

Deep ensemble learning for Alzheimers disease classification. - Ning An 001; Huitong Ding; Jiaoyun Yang; Rhoda Au; Ting Fang Alvin Ang (CoRR, 2019)

Semi-automatic Causal Graph Construction System. - Kun Cheng; Xiaoxuan Cui; Siyi Guo; Jiaoyun Yang; Xi Wu 003 (CSSE, 2020)

Causal Extraction from the Literature of Pressure Injury and Risk Factors. - Siyi Guo; Liuqi Jin; Jiaoyun Yang; Mengyao Jiang; Lin Han; Ning An 001 (ICKG, 2020)

A deep belief network-based method to identify proteomic risk markers for Alzheimer disease. - Ning An 001; Liuqi Jin; Huitong Ding; Jiaoyun Yang; Jing Yuan (CoRR, 2020)

Deep ensemble learning for Alzheimer's disease classification. - Ning An 001; Huitong Ding; Jiaoyun Yang; Rhoda Au; Ting Fang Alvin Ang (J. Biomed. Informatics, 2020)

Data Cleaning of Binary Sensor Events in Activity Recognition by Cluster-Based Methods. - Chunyang Zhao; Xia Que; Yue Yin; Xiaoman Xing; Jiaoyun Yang; Ning An 001 (HCI (26), 2021)

Intervention Prediction for Patients with Pressure Injury Using Random Forest. - Liuqi Jin; Yan Pan 011; Jiaoyun Yang; Lin Han; Lin Lv; Miki Raviv; Ning An 001 (ICBK, 2021)

A Similarity Measurement with Entropy-Based Weighting for Clustering Mixed Numerical and Categorical Datasets. - Xia Que; Siyuan Jiang; Jiaoyun Yang; Ning An 001 (Algorithms, 2021)

Digital Mahjong System: Towards Precise Cognitive Assessment with IoT Technologies. - Ning An 001; Enze Hu; Yanrui Guo; Jiaoyun Yang; Rhoda Au; Huitong Ding (HCI (46), 2022)

Automatic Life Event Tree Generation for Older Adults. - Fang Gui; Xi Wu 003; Min Hu; Jiaoyun Yang (HCI (46), 2022)

Causal Pattern Representation Learning for Extracting Causality from Literature. - Jiaoyun Yang; Hao Xiong; Hongjin Zhang; Min Hu; Ning An 001 (MLNLP, 2022)

Determining the Sampling Size with Maintaining the Probability Distribution. - Jiaoyun Yang; Zhenyu Ren; Junda Wang; Lian Li 003 (NCTCS, 2022)

Few-Shot Nested Named Entity Recognition. - Hong Ming; Jiaoyun Yang; Lili Jiang 002; Yan Pan 011; Ning An 001 (CoRR, 2022)

Causality fields in nonlinear causal effect analysis. - Aiguo Wang; Li Liu 001; Jiaoyun Yang; Lian Li 003 (Frontiers Inf. Technol. Electron. Eng., 2022)

Usability Evaluation of the Aging Scenario Wiki as a Learning Tool. - Zekai Lu; Yaru Li; Siwei Wang 007; Aoran Wu; Jiaoyun Yang; Honglin Chen; Ning An 001 (HCI (49), 2023)

Designing and Evaluating MahjongBrain: A Digital Cognitive Assessment Tool Through Gamification. - Jiaoyun Yang; Richu Jiang; Huitong Ding; Rhoda Au; Jinying Chen; Clara Li; Ning An 001 (HCI (49), 2023)

StoryLens: Personalizing News Recommendations for Older Adults with Their Life Stories. - Jiaoyun Yang; Jianguang Lin; Fang Gui; Hongdao Meng; Honglin Chen; Ning An 001 (HCI (49), 2023)

Few-Shot Named Entity Recognition via Label-Attention Mechanism. - Yan Pan 011; Jiaoyun Yang; Hong Ming; Lili Jiang 002; Ning An 001 (ICCAI, 2023)

Location Attention Knowledge Embedding Model for Image-Text Matching. - Guoqing Xu; Min Hu; Xiaohua Wang 002; Jiaoyun Yang; Nan Li; Qingyu Zhang (PRCV (1), 2023)

Toward Better Understanding Older Adults: A Biography Brief Timeline Extraction Approach. - Ning An 001; Fang Gui; Liuqi Jin; Hong Ming; Jiaoyun Yang (Int. J. Hum. Comput. Interact., 2023)

A primary and secondary feature interactive learning network for bone age assessment. - Min Hu; Yuhang Wang; Xiaohua Wang 002; Wei Fan 010; Jiaoyun Yang; Ning An 001 (Biomed. Signal Process. Control., 2023)

LPNER: Label Prompt for Few-shot Nested Named Entity Recognition. - Jiaoyun Yang; Zhihan Zhu; Hong Ming; Lili Jiang 002; Ning An 001 (ACML, 2024)

Automatic Depression Detection Network Based on Facial Images and Facial Landmarks Feature Fusion. - Min Hu; Lingxiang Xu; Lei Liu; Xiaohua Wang 002; Hongbo Li; Jiaoyun Yang (BIBM, 2024)

CauImputation: Utilizing Structural Causal Model in Data Imputation. - Yue Yin; Jiaoyun Yang; Ning An 001 (BIBM, 2024)

EasyTell: A Caregiver-Centered Prototype for Innovating Everyday Eldercare through Bite-Sized Digital Storytelling. - Ning An 001; Fang Gui; Yang Liu; Honglin Chen; Jiaoyun Yang (CHI Extended Abstracts, 2024)

Research on Entity Representation Bias Adjustment in Causal Relationship Extraction. - Jiaoyun Yang; Dongyan Ji; Long Mei; Min Hu (ICCAI, 2024)

Unearthing Extreme Causal Effects via Meta-Learner. - Jiaoyun Yang; Chunlei Ren; Yi Tao; Yue Yin; Lian Li 003 (ICCAI, 2024)

KEBR: Knowledge Enhanced Self-Supervised Balanced Representation for Multimodal Sentiment Analysis. - Aoqiang Zhu; Min Hu; Xiaohua Wang 002; Jiaoyun Yang; Yiming Tang 001; Fuji Ren (ACM Multimedia, 2024)

Few-shot nested named entity recognition. - Hong Ming; Jiaoyun Yang; Fang Gui; Lili Jiang 002; Ning An 001 (Knowl. Based Syst., 2024)

Parallel Multiscale Bridge Fusion Network for Audio-Visual Automatic Depression Assessment. - Min Hu; Lei Liu; Xiaohua Wang 002; Yiming Tang 001; Jiaoyun Yang; Ning An 001 (IEEE Trans. Comput. Soc. Syst., 2024)

DaNet: Dual-Aware Enhanced Alignment Network for Multimodal Aspect-Based Sentiment Analysis. - Aoqiang Zhu; Min Hu; Xiaohua Wang 002; Jiaoyun Yang; Yiming Tang 001; Ning An 001 (ACL (Findings), 2025)

Proxy-Driven Robust Multimodal Sentiment Analysis with Incomplete Data. - Aoqiang Zhu; Min Hu; Xiaohua Wang 002; Jiaoyun Yang; Yiming Tang 001; Ning An 001 (ACL (1), 2025)

Multimodal Invariant Sentiment Representation Learning. - Aoqiang Zhu; Min Hu; Xiaohua Wang 002; Jiaoyun Yang; Yiming Tang 001; Ning An 001 (ACL (Findings), 2025)

Harnessing high-quality pseudo-labels for robust few-shot nested named entity recognition. - Hong Ming; Jiaoyun Yang; Shuo Liu; Lili Jiang 002; Ning An 001 (Eng. Appl. Artif. Intell., 2025)

Mitigating prototype shift: Few-shot nested named entity recognition with prototype-attention contrastive learning. - Hong Ming; Jiaoyun Yang; Shuo Liu; Lili Jiang 002; Ning An 001 (Expert Syst. Appl., 2025)

CDC-FSL: A Causal De-Confounding framework for Few-Shot Learning. - Yue Yin; Jiaoyun Yang; Ning An 001; Lian Li 003 (Knowl. Based Syst., 2025)