iUUCD 2.0: an update with rich annotations for ubiquitin and ubiquitin-like conjugations. - Jiaqi Zhou 003; Yang Xu; Shaofeng Lin; Yaping Guo; Wankun Deng; Ying Zhang 052; Anyuan Guo; Yu Xue 001 (Nucleic Acids Res., 2018)

iEKPD 2.0: an update with rich annotations for eukaryotic protein kinases, protein phosphatases and proteins containing phosphoprotein-binding domains. - Yaping Guo; Di Peng; Jiaqi Zhou 003; Shaofeng Lin; Chenwei Wang; Wanshan Ning; Hao-Dong Xu; Wankun Deng; Yu Xue 001 (Nucleic Acids Res., 2019)

GPS 5.0: An Update on the Prediction of Kinase-specific Phosphorylation Sites in Proteins. - Chenwei Wang; Hao-Dong Xu; Shaofeng Lin; Wankun Deng; Jiaqi Zhou 003; Ying Zhang 052; Ying Shi; Di Peng; Yu Xue 001 (Genom. Proteom. Bioinform., 2020)

EPSD: a well-annotated data resource of protein phosphorylation sites in eukaryotes. - Shaofeng Lin; Chenwei Wang; Jiaqi Zhou 003; Ying Shi; Chen Ruan; Yiran Tu; Lan Yao; Di Peng; Yu Xue 001 (Briefings Bioinform., 2021)

Defining Proximity Proteome of Histone Modifications by Antibody-mediated Protein A-APEX2 Labeling. - Xinran Li; Jiaqi Zhou 003; Wenjuan Zhao; Qing Wen; Weijie Wang; Huipai Peng; Yuan Gao; Kelly J. Bouchonville; Steven M. Offer; Kuiming Chan; Zhiquan Wang; Nan Li; et al. (Genom. Proteom. Bioinform., 2022)