Inter-chain contact map prediction for protein complex based on graph attention network and triangular multiplication update. - Tong Wu; He Huang; Jiashan Li; Wenda Wang; Xinqi Gong (BIBM, 2022)

$ mathcal{S}$ able: bridging the gap in protein structure understanding with an empowering and versatile pre-training paradigm. - Jiashan Li; Xi Chen; He Huang; Mingliang Zeng; Jingcheng Yu; Xinqi Gong; Qiwei Ye (Briefings Bioinform., 2025)

Harnessing pre-trained models for accurate prediction of protein-ligand binding affinity. - Jiashan Li; Xinqi Gong (BMC Bioinform., 2025)