References of References: How Far is the Knowledge Ancestry. - Chao Min; Jiawei Xu 006; Tao Han; Yi Bu 001 (JCDL, 2021)

Decoding Patterns of Data Generation Teams for Clinical and Scientific Success: Insights from the Bridge2AI Talent Knowledge Graph. - Jiawei Xu 006; Qingnan Xie; Meijun Liu; Zhandos Sembay; Swathi Thaker; Pamela Payne-Foster; Jake Y. Chen; Ying Ding 001 (JCDL, 2024)

Path-RAG: Knowledge-Guided Key Region Retrieval for Open-ended Pathology Visual Question Answering. - Awais Naeem; Tianhao Li; Huang-Ru Liao; Jiawei Xu 006; Aby M. Mathew; Zehao Zhu; Zhen Tan 001; Ajay Kumar Jaiswal; Raffi A. Salibian; Ziniu Hu; Tianlong Chen 001; Ying Ding 001 (ML4H@NeurIPS, 2024)

Thought Graph: Generating Thought Process for Biological Reasoning. - Chi-Yang Hsu; Kyle Cox; Jiawei Xu 006; Zhen Tan 001; Tianhua Zhai; Mengzhou Hu; Dexter Pratt; Tianlong Chen 001; Ziniu Hu; Ying Ding 001 (WWW (Companion Volume), 2024)

PubMed knowledge graph 2.0: Connecting papers, patents, and clinical trials in biomedical science. - Jian Xu 003; Chao Yu; Jiawei Xu 006; Ying Ding 001; Vetle I. Torvik; Jaewoo Kang; Mujeen Sung; Min Song 001 (CoRR, 2024)

Mapping from Meaning: Addressing the Miscalibration of Prompt-Sensitive Language Models. - Kyle Cox; Jiawei Xu 006; Yikun Han; Rong Xu; Tianhao Li; Chi-Yang Hsu; Tianlong Chen 001; Walter Gerych; Ying Ding 001 (AAAI, 2025)

Thought Graph: Balancing Specificity and Uncertainty in LLM-Based Gene Set Annotation. - Kyle Cox; Gang Qu; Chi-Yang Hsu; Jiawei Xu 006; Yingtong Zhou; Zhen Tan 001; Mengzhou Hu; Tianlong Chen 001; Ziniu Hu; Zhongming Zhao; Ying Ding 001 (ICHI, 2025)

Position: Open and Closed Large Language Models in Healthcare. - Jiawei Xu 006; Ying Ding 001; Yi Bu 001 (CoRR, 2025)

Demo: Interactive Visualization of Semantic Relationships in a Biomedical Project's Talent Knowledge Graph. - Jiawei Xu 006; Zhandos Sembay; Swathi Thaker; Pamela Payne-Foster; Jake Yue Chen; Ying Ding 001 (CoRR, 2025)

LLM-TA: An LLM-Enhanced Thematic Analysis Pipeline for Transcripts from Parents of Children with Congenital Heart Disease. - Muhammad Zain Raza; Jiawei Xu 006; Terence Lim; Lily Boddy; Carlos M. Mery; Andrew Well; Ying Ding 001 (CoRR, 2025)

MedHallu: A Comprehensive Benchmark for Detecting Medical Hallucinations in Large Language Models. - Shrey Pandit; Jiawei Xu 006; Junyuan Hong; Zhangyang Wang; Tianlong Chen 001; Kaidi Xu; Ying Ding 001 (CoRR, 2025)

TAMA: A Human-AI Collaborative Thematic Analysis Framework Using Multi-Agent LLMs for Clinical Interviews. - Huimin Xu; Seungjun Yi; Terence Lim; Jiawei Xu 006; Andrew Well; Carlos M. Mery; Aidong Zhang; Yuji Zhang 002; Heng Ji 001; Keshav Pingali; Yan Leng; Ying Ding 001 (CoRR, 2025)

Beyond Feature Importance: Feature Interactions in Predicting Post-Stroke Rigidity with Graph Explainable AI. - Jiawei Xu 006; Yonggeon Lee; Anthony Elkommos Youssef; Eunjin Yun; Tinglin Huang; Tianjian Guo; Hamidreza Saber; Rex Ying; Ying Ding 001 (CoRR, 2025)