CRAFT: Compact genome Representation toward large-scale Alignment-Free daTabase. - Yang Young Lu; Jiaxing Bai; Yiwen Wang; Ying Wang 005; Fengzhu Sun (Bioinform., 2021)

BOMGraph: Boosting Multi-scenario E-commerce Search with a Unified Graph Neural Network. - Shuai Fan 007; Jinping Gou; Yang Li 213; Jiaxing Bai; Chen Lin 001; Wanxian Guan; Xubin Li; Hongbo Deng; Jian Xu 015; Bo Zheng 007 (CIKM, 2023)

ViPER: Virus-Prokaryote intEraction prediction using foundation model with hieraRchical contrastive learning. - Feng Zhou; Yushuang He; Jiaxing Bai; Yichun Gao; Ying Wang (BIBM, 2024)

ViTax: adaptive hierarchical viral taxonomy classification with a taxonomy belief tree on a foundation model. - Yushuang He; Feng Zhou 021; Jiaxing Bai; Yichun Gao; Xiaobing Huang; Ying Wang 005 (Briefings Bioinform., 2024)

Autonomous Multi-Modal LLM Agents for Treatment Planning in Focused Ultrasound Ablation Surgery. - Lina Zhao; Jiaxing Bai; Zihao Bian; Qingyue Chen; Yafang Li; Guangbo Li; Min He; Huaiyuan Yao; Zongjiu Zhang (CoRR, 2025)