ROKU: a novel method for identification of tissue-specific genes. - Koji Kadota; Jiazhen Ye; Yuji Nakai; Tohru Terada; Kentaro Shimizu (BMC Bioinform., 2006)

AtNAGNAG: a comprehensive database for NAGNAG alternative splicing in Arabidopsis thaliana. - Qinglei Zhang; Qinran Zhang; Shuzhang Li; Jiazhen Ye; Wenhao Tang; Meng Yin; Keyi Wang; Kai Wang; Chuanhong Shi; Chong Wang; Hao Fan; Xiaoyong Sun; et al. (ICBDR, 2018)

AtCircDB: a tissue-specific database for Arabidopsis circular RNAs. - Jiazhen Ye; Lin Wang 032; Shuzhang Li; Qinran Zhang; Qinglei Zhang; Wenhao Tang; Kai Wang; Kun Song; Gaurav Sablok; Xiaoyong Sun; Hongwei Zhao (Briefings Bioinform., 2019)

MHSA: A Multi-scale Hypergraph Network for Mild Cognitive Impairment Detection via Synchronous and Attentive Fusion. - Manman Yuan; Weiming Jia; Xiong Luo; Jiazhen Ye; Peican Zhu; Junlin Li (BIBM, 2024)

AoSE-GCN: Attention-Aware Aggregation Operator for Spatial-Enhanced GCN. - Jiazhen Ye; Chunyan An; Qiang Yang 015; Zhixu Li (DASFAA (2), 2024)

EdgeViewDet: Dynamic Edge-Centric Fusion Network with Granger Causality for Neurological Disorders Detection. - Manman Yuan; Jiapei Li; Yan Zhao; Jiacheng Wang; Jiazhen Ye; Weiming Jia (ICIC (26), 2025)