Combining Discrete and Neural Features for Sequence Labeling. - Jie Yang 039; Zhiyang Teng; Meishan Zhang; Yue Zhang 004 (CICLing (1), 2016)

LibN3L: A Lightweight Package for Neural NLP. - Meishan Zhang; Jie Yang 039; Zhiyang Teng; Yue Zhang 004 (LREC, 2016)

Universal Dependencies Parsing for Colloquial Singaporean English. - Hongmin Wang; Yue Zhang 004; GuangYong Leonard Chan; Jie Yang 039; Hai Leong Chieu (ACL (1), 2017)

Neural Word Segmentation with Rich Pretraining. - Jie Yang 039; Yue Zhang 004; Fei Dong (ACL (1), 2017)

Attention-based Recurrent Convolutional Neural Network for Automatic Essay Scoring. - Fei Dong; Yue Zhang 004; Jie Yang 039 (CoNLL, 2017)

Neural Reranking for Named Entity Recognition. - Jie Yang 039; Yue Zhang 004; Fei Dong (RANLP, 2017)

YEDDA: A Lightweight Collaborative Text Span Annotation Tool. - Jie Yang 039; Yue Zhang 004 (CoRR, 2017)

NCRF++: An Open-source Neural Sequence Labeling Toolkit. - Jie Yang 039; Yue Zhang 004 (ACL (4), 2018)

YEDDA: A Lightweight Collaborative Text Span Annotation Tool. - Jie Yang 039; Yue Zhang 004; Linwei Li; Xingxuan Li (ACL (4), 2018)

Chinese NER Using Lattice LSTM. - Yue Zhang 004; Jie Yang 039 (ACL (1), 2018)

Design Challenges and Misconceptions in Neural Sequence Labeling. - Jie Yang 039; Shuailong Liang; Yue Zhang 004 (COLING, 2018)

Subword Encoding in Lattice LSTM for Chinese Word Segmentation. - Jie Yang 039; Yue Zhang 004; Shuailong Liang (NAACL-HLT (1), 2019)

Implementing an IT-Based Intervention to Improve Follow-up Rates of Abnormal Cancer Screening Results: the mFOCUS Trial. - Courtney J. Diamond; Steven J. Atlas; Tin H. Dang; Jie Yang 039; Li Zhou 007; Sanja Percac-Lima; Amy J. Wint; Kimberly A. Harris; E. John Orav; Erica S. Breslau; Shoshana Hort; Anna Tosteson; et al. (AMIA, 2020)

Deep Learning to Detect Allergy Events from Hospital Safety Reports. - Jie Yang 039; Liqin Wang; Neelam A. Phadke; Paige G. Wickner; Christian M. Mancini; Kimberly G. Blumenthal; Li Zhou 007 (AMIA, 2020)

Mining clinical phrases from nursing notes to discover risk factors of patient deterioration. - Zfania Tom Korach; Jie Yang 039; Sarah Collins Rossetti; Kenrick D. Cato; Min-Jeoung Kang; Christopher Knaplund; Kumiko O. Schnock; Jose P. Garcia; Haomiao Jia; Jessica M. Schwartz; Li Zhou 007 (Int. J. Medical Informatics, 2020)

From Genesis to Creole Language: Transfer Learning for Singlish Universal Dependencies Parsing and POS Tagging. - Hongmin Wang; Jie Yang 039; Yue Zhang 004 (ACM Trans. Asian Low Resour. Lang. Inf. Process., 2020)

Lattice LSTM for Chinese Sentence Representation. - Yue Zhang 004; Yile Wang 001; Jie Yang 039 (IEEE ACM Trans. Audio Speech Lang. Process., 2020)

Comparison of Machine Learning Algorithms for Earlier Detection of Cognitive Decline from Clinical Notes in the Electronic Health Records. - Liqin Wang; John Laurentiev; Jie Yang 039; Ying-Chih Lo; Rebecca E. Amariglio; Gad A. Marshall; Li Zhou 007 (AMIA, 2021)

Natural Language Processing to Identify Abnormal Breast, Lung, and Cervical Cancer Screening Test Results from Unstructured Reports to Support Timely Follow-up. - Courtney J. Diamond; John Laurentiev; Jie Yang 039; Amy Wint; Kimberly A. Harris; Tin H. Dang; Amrita Mecker; Emily B. Carpenter; Anna N. A. Tosteson; Adam Wright; Jennifer S. Haas; Steven J. Atlas; et al. (MedInfo, 2021)

Better Pay Attention Whilst Fuzzing. - Shunkai Zhu; Jingyi Wang 004; Jun Sun 001; Jie Yang 039; Xingwei Lin; Liyi Zhang; Peng Cheng 001 (CoRR, 2021)

Low-resource Accent Classification in Geographically-proximate Settings: A Forensic and Sociophonetics Perspective. - Qingcheng Zeng; Dading Chong; Peilin Zhou; Jie Yang 039 (INTERSPEECH, 2022)

METS-CoV: A Dataset of Medical Entity and Targeted Sentiment on COVID-19 Related Tweets. - Peilin Zhou; Zeqiang Wang; Dading Chong; Zhijiang Guo; Yining Hua; Zichang Su; Zhiyang Teng; Jiageng Wu; Jie Yang 039 (NeurIPS, 2022)

GreenPLM: Cross-lingual pre-trained language models conversion with (almost) no cost. - Qingcheng Zeng; Lucas Garay; Peilin Zhou; Dading Chong; Yining Hua; Jiageng Wu; Yikang Pan; Han Zhou 010; Jie Yang 039 (CoRR, 2022)

Using Twitter data to understand public perceptions of approved versus off-label use for COVID-19-related medications. - Yining Hua; Hang Jiang; Shixu Lin; Jie Yang 039; Joseph M. Plasek; David W. Bates; Li Zhou 007 (J. Am. Medical Informatics Assoc., 2022)

YATO: Yet Another deep learning based Text analysis Open toolkit. - Zeqiang Wang; Yile Wang 001; Jiageng Wu; Zhiyang Teng; Jie Yang 039 (EMNLP (Demos), 2023)

GreenPLM: Cross-Lingual Transfer of Monolingual Pre-Trained Language Models at Almost No Cost. - Qingcheng Zeng; Lucas Garay; Peilin Zhou; Dading Chong; Yining Hua; Jiageng Wu; Yikang Pan; Han Zhou 010; Rob Voigt; Jie Yang 039 (IJCAI, 2023)

Exploring Social Media for Early Detection of Depression in COVID-19 Patients. - Jiageng Wu; Xian Wu 001; Yining Hua; Shixu Lin; Yefeng Zheng 001; Jie Yang 039 (WWW, 2023)

Qualifying Chinese Medical Licensing Examination with Knowledge Enhanced Generative Pre-training Model. - Jiageng Wu; Xian Wu 001; Zhaopeng Qiu; Minghui Li; Yefeng Zheng 001; Jie Yang 039 (CoRR, 2023)

Streamlining Social Media Information Retrieval for Public Health Research with Deep Learning. - Yining Hua; Shixu Lin; Minghui Li; Yujie Zhang; Peilin Zhou; Ying-Chih Lo; Li Zhou 007; Jie Yang 039 (CoRR, 2023)

Pre-trained Online Contrastive Learning for Insurance Fraud Detection. - Rui Zhang; Dawei Cheng; Jie Yang 039; Yi Ouyang; Xian Wu 001; Yefeng Zheng 001; Changjun Jiang (AAAI, 2024)

Revealing COVID-19's Social Dynamics: Diachronic Semantic Analysis of Vaccine and Symptom Discourse on Twitter. - Zeqiang Wang; Jiageng Wu; Yuqi Wang; Wei Xjtlu; Jie Yang 039; Nishanth Sastry; Jon Johnson; Suparna De (EMNLP (Findings), 2024)

Guiding Clinical Reasoning with Large Language Models via Knowledge Seeds. - Jiageng Wu; Xian Wu 001; Jie Yang 039 (IJCAI, 2024)

MedJourney: Benchmark and Evaluation of Large Language Models over Patient Clinical Journey. - Xian Wu 001; Yutian Zhao; Yunyan Zhang; Jiageng Wu; Zhihong Zhu; Yingying Zhang; Yi Ouyang; Ziheng Zhang; Huimin Wang; Zhenxi Lin; Jie Yang 039; Shuang Zhao; et al. (NeurIPS, 2024)

MedKP: Medical Dialogue with Knowledge Enhancement and Clinical Pathway Encoding. - Jiageng Wu; Xian Wu 001; Yefeng Zheng 001; Jie Yang 039 (CoRR, 2024)

Generation is better than Modification: Combating High Class Homophily Variance in Graph Anomaly Detection. - Rui Zhang; Dawei Cheng; Xin Liu; Jie Yang 039; Yi Ouyang; Xian Wu 001; Yefeng Zheng 001 (CoRR, 2024)

FinTruthQA: A Benchmark Dataset for Evaluating the Quality of Financial Information Disclosure. - Ziyue Xu; Peilin Zhou; Xinyu Shi; Jiageng Wu; Yikang Jiang; Bin Ke; Jie Yang 039 (CoRR, 2024)

Revealing COVID-19's Social Dynamics: Diachronic Semantic Analysis of Vaccine and Symptom Discourse on Twitter. - Zeqiang Wang; Jiageng Wu; Yuqi Wang; Wei Wang 042; Jie Yang 039; Jon Johnson; Nishanth Sastry; Suparna De (CoRR, 2024)

Streamlining social media information retrieval for public health research with deep learning. - Yining Hua; Jiageng Wu; Shixu Lin; Minghui Li; Yujie Zhang; Dinah Foer; Siwen Wang; Peilin Zhou; Jie Yang 039; Li Zhou 007 (J. Am. Medical Informatics Assoc., 2024)

Large language models leverage external knowledge to extend clinical insight beyond language boundaries. - Jiageng Wu; Xian Wu 001; Zhaopeng Qiu; Minghui Li; Shixu Lin; Yingying Zhang; Yefeng Zheng 001; Changzheng Yuan; Jie Yang 039 (J. Am. Medical Informatics Assoc., 2024)

Better Pay Attention Whilst Fuzzing. - Shunkai Zhu; Jingyi Wang 004; Jun Sun 001; Jie Yang 039; Xingwei Lin; Tian Wang 001; Liyi Zhang; Peng Cheng 001 (IEEE Trans. Software Eng., 2024)

Grad: Guided Relation Diffusion Generation for Graph Augmentation in Graph Fraud Detection. - Jie Yang 039; Rui Zhang; Ziyang Cheng; Dawei Cheng; Guang Yang; Bo Wang 162 (WWW, 2025)

Comparative ranking of marginal confounding impact of natural language processing-derived versus structured features in pharmacoepidemiology. - Joseph M. Plasek; Richard Wyss; Janick Weberpals; Jie Yang 039; Thomas DeRamus; Theodore N. Tsacogianis; Kerry Ngan; Lily G. Bessette; Kueiyu Joshua Lin; Li Zhou 007 (Comput. Biol. Medicine, 2025)

Identification of an ANCA-associated vasculitis cohort using deep learning and electronic health records. - Liqin Wang; John Laurentiev; Claire Cook; Shruthi Srivatsan; Yining Hua; Jie Yang 039; Eli Miloslavsky; Hyon K. Choi; Li Zhou 007; Zachary S. Wallace (Int. J. Medical Informatics, 2025)

Analysis of longitudinal social media for monitoring symptoms during a pandemic. - Shixu Lin; Lucas Garay; Yining Hua; Zhijiang Guo; Wanxin Li; Minghui Li; Yu-Jie Zhang; Xiaolin Xu; Jie Yang 039 (J. Biomed. Informatics, 2025)

Natural language processing for scalable feature engineering and ultra-high-dimensional confounding adjustment in healthcare database studies. - Richard Wyss; Jie Yang 039; Sebastian Schneeweiss; Joseph M. Plasek; Li Zhou 007; Thomas DeRamus; Janick Weberpals; Kerry Ngan; Theodore N. Tsacogianis; Kueiyu Joshua Lin (J. Biomed. Informatics, 2025)

BRIDGE: Benchmarking Large Language Models for Understanding Real-world Clinical Practice Text. - Jiageng Wu; Bowen Gu; Ren Zhou; Kevin Xie; Douglas Snyder; Yixing Jiang; Valentina Carducci; Richard Wyss; Rishi J. Desai; Emily Alsentzer; Leo Anthony Celi; Adam Rodman; et al. (CoRR, 2025)

Scalable Medication Extraction and Discontinuation Identification from Electronic Health Records Using Large Language Models. - Chong Shao; Douglas Snyder; Chiran Li; Bowen Gu; Kerry Ngan; Chun-Ting Yang; Jiageng Wu; Richard Wyss; Kueiyu Joshua Lin; Jie Yang 039 (CoRR, 2025)