Quantifying pluripotency landscape of cell differentiation from scRNA-seq data by continuous birth-death process. - Jifan Shi; Tiejun Li; Luonan Chen; Kazuyuki Aihara (PLoS Comput. Biol., 2019)

Quantifying Waddington's epigenetic landscape: a comparison of single-cell potency measures. - Jifan Shi; Andrew E. Teschendorff; Weiyan Chen; Luonan Chen; Tiejun Li (Briefings Bioinform., 2020)

Quantifying Direct Dependencies in Biological Networks by Multiscale Association Analysis. - Jifan Shi; Juan Zhao; Xiaoping Liu 002; Luonan Chen; Tiejun Li (IEEE ACM Trans. Comput. Biol. Bioinform., 2020)

ABi-BFS: A High-performance Parallel Breadth-First Search on Shared-memory Systems. - Jifan Shi; Yun Xu (ICPADS, 2023)

VidBot: Intelligent Video Learning Tool for Content Mining and Playback Traffic Statistics. - Qinhua Xie; Weicong Liu; Fan Yuan; Jifan Shi; Ziyu Liu; Yanbing Zhang (ICME Workshops, 2024)

Deciphering interventional dynamical causality from non-intervention systems. - Jifan Shi; Yang Li 008; Juan Zhao; Siyang Leng; Kazuyuki Aihara; Luonan Chen; Wei Lin (CoRR, 2024)

Dynamical causality under invisible confounders. - Jinling Yan; Shao-Wu Zhang; Chihao Zhang 002; Weitian Huang; Jifan Shi; Luonan Chen (CoRR, 2024)

Utilizing Causal Network Markers to Identify Tipping Points ahead of Critical Transition. - Shirui Bian; Zezhou Wang; Siyang Leng; Wei Lin; Jifan Shi (CoRR, 2024)

High-Dimensional Vector Quantization: General Framework, Recent Advances, and Future Directions. - Jianyang Gao; Yutong Gou; Yuexuan Xu; Jifan Shi; Cheng Long 001; Raymond Chi-Wing Wong; Themis Palpanas (IEEE Data Eng. Bull., 2024)

Spruce: a Fast yet Space-saving Structure for Dynamic Graph Storage. - Jifan Shi; Biao Wang; Yun Xu (Proc. ACM Manag. Data, 2024)