NASTRA: accurate analysis of short tandem repeat markers by nanopore sequencing with repeat-structure-aware algorithm. - Zilin Ren; Jiarong Zhang; Yixiang Zhang; Tingting Yang; Pingping Sun; Jiguo Xue; Xiaochen Bo; Bo Zhou; Jiangwei Yan; Ming Ni (Briefings Bioinform., 2024)

DeepPFP: a multi-task-aware architecture for protein function prediction. - Han Wang; Zilin Ren; Jinghong Sun; Yongbing Chen; Xiaochen Bo; Jiguo Xue; Jingyang Gao; Ming Ni (Briefings Bioinform., 2024)

AnnCovDB: a manually curated annotation database for mutations in SARS-CoV-2 spike protein. - Xiaomin Zhang; Zhongyi Lei; Jiarong Zhang; Tingting Yang; Xian Liu; Jiguo Xue; Ming Ni (Database J. Biol. Databases Curation, 2025)