A program for predicting significant RNA secondary structures. - Shu-Yun Le; Jih-Hsiang Chen; Kathleen M. Currey; Jacob V. Maizel (Comput. Appl. Biosci., 1988)

An improved secondary structure computation method and its application to intervening sequence in the human alpha-likeglobin mRNA precursors. - Shu-Yun Le; Jih-Hsiang Chen; Ruth Nussinov; Jacob V. Maizel (Comput. Appl. Biosci., 1988)

RNA secondary structures: comparison and determination of frequently recurring substructures by consensus. - Shu-Yun Le; John Owens; Ruth Nussinov; Jih-Hsiang Chen; Bruce A. Shapiro; Jacob V. Maizel (Comput. Appl. Biosci., 1989)

A computational procedure for assessing the significance of RNA secondary structure. - Jih-Hsiang Chen; Shu-Yun Le; Bruce A. Shapiro; Kathleen M. Currey; Jacob V. Maizel (Comput. Appl. Biosci., 1990)

Detection of unusual RNA folding regions in HIV and SIV sequences. - Shu-Yun Le; Jih-Hsiang Chen; Jacob V. Maizel (Comput. Appl. Biosci., 1991)

A procedure for RNA pseudoknot prediction. - Jih-Hsiang Chen; Shu-Yun Le; Jacob V. Maizel (Comput. Appl. Biosci., 1992)

A pseudoreceptor docking study of 4, 5-alpha-epoxymorphinans with a range of dielectric constants. - Rick Gussio; Sovitj Pou; Jih-Hsiang Chen; Gary W. Smythers (J. Comput. Aided Mol. Des., 1992)

Optimization and Performance Analysis of a Massively Parallel Dynamic Programming Algorithm for Rna Secondary Structure Prediction. - Bruce A. Shapiro; Jih-Hsiang Chen; Tim Busse; Joseph Navetta; Wojciech Kasprzak; Jacob V. Maizel Jr. (Int. J. High Perform. Comput. Appl., 1995)

Optimization of an RNA Folding Algorithm for Parallel Architectures. - Jih-Hsiang Chen; Shu-Yun Le; Bruce A. Shapiro; Jacob V. Maizel (Parallel Comput., 1998)

Statistical Inference for Well-ordered Structures in Nucleotide Sequences. - Shu-Yun Le; Jih-Hsiang Chen; Jacob V. Maizel (CSB, 2003)

Discovering well-ordered folding patterns in nucleotide sequences. - Shu-Yun Le; Jih-Hsiang Chen; Danielle Konings; Jacob V. Maizel (Bioinform., 2003)

Statistical Inference on Distinct RNA Stem-Loops in Genomic Sequences. - Shu-Yun Le; Jih-Hsiang Chen (BIRD, 2007)