ArrayXPath II: mapping and visualizing microarray gene-expression data with biomedical ontologies and integrated biological pathway resources using Scalable Vector Graphics. - Hee-Joon Chung; Chan Hee Park; Mi Ryung Han; Seokho Lee; Jung Hun Ohn; Jihoon Kim; Jihun Kim 001; Ju Han Kim (Nucleic Acids Res., 2005)

Protein Classification from Protein-Domain and Gene-Ontology Annotation Information Using Formal Concept Analysis. - Mi Ryung Han; Hee-Joon Chung; Jihun Kim 001; Dong-Young Noh; Ju Han Kim (International Conference on Computational Science (2), 2007)

Genomic characterization of perturbation sensitivity. - Jung Hun Ohn; Jihun Kim 001; Ju Han Kim (ISMB/ECCB (Supplement of Bioinformatics), 2007)

BioLattice: A framework for the biological interpretation of microarray gene expression data using concept lattice analysis. - Jihun Kim 001; Hee-Joon Chung; Yong Jung; Kack-Kyun Kim; Ju Han Kim (J. Biomed. Informatics, 2008)

Identifying set-wise differential co-expression in gene expression microarray data. - Sung-Bum Cho; Jihun Kim 001; Ju Han Kim (BMC Bioinform., 2009)

GOChase-II: correcting semantic inconsistencies from Gene Ontology-based annotations for gene products. - Yu Rang Park; Jihun Kim 001; Hye Won Lee; Young Jo Yoon; Ju Han Kim (BMC Bioinform., 2011)

Semantically enabled and statistically supported biological hypothesis testing with tissue microarray databases. - Young Soo Song; Chan Hee Park; Hee-Joon Chung; Hyunjung Shin; Jihun Kim 001; Ju Han Kim (BMC Bioinform., 2011)

Bi-directional semantic similarity for gene ontology to optimize biological and clinical analyses. - Sang Jay Bien; Chan Hee Park; Hae Jin Shim; Woongcheol Yang; Jihun Kim 001; Ju Han Kim (J. Am. Medical Informatics Assoc., 2012)

Semantic Signature: Comparative Interpretation of Gene Expression on a Semantic Space. - Jihun Kim 001; Kee-Won Kim; Ju Han Kim (Comput. Math. Methods Medicine, 2016)