CHARMM general force field: A force field for drug-like molecules compatible with the CHARMM all-atom additive biological force fields. - Kenno Vanommeslaeghe; Elizabeth Hatcher; Chayan Acharya; Sibsankar Kundu; Shijun Zhong; Jihyun Shim; Eva Darian; Olgun Guvench; Pedro E. M. Lopes; Igor Vorobyov; Alexander D. MacKerell Jr. (J. Comput. Chem., 2010)

Intrinsic Energy Landscapes of Amino Acid Side-Chains. - Xiao Zhu; Pedro E. M. Lopes; Jihyun Shim; Alexander D. MacKerell Jr. (J. Chem. Inf. Model., 2012)

Correction to Intrinsic Energy Landscapes of Amino Acid Side-Chains. - Xiao Zhu; Pedro E. M. Lopes; Jihyun Shim; Alexander D. MacKerell Jr. (J. Chem. Inf. Model., 2012)

(Ala)4-X-(Ala)4 as a model system for the optimization of the χ1 and χ2 amino acid side-chain dihedral empirical force field parameters. - Jihyun Shim; Xiao Zhu; Robert B. Best; Alexander D. MacKerell Jr. (J. Comput. Chem., 2013)