Inversion Medians Outperform Breakpoint Medians in Phylogeny Reconstruction from Gene-Order Data. - Bernard M. E. Moret; Adam C. Siepel; Jijun Tang; Tao Liu (WABI, 2002)

Steps toward accurate reconstructions of phylogenies from gene-order data. - Bernard M. E. Moret; Jijun Tang; Li-San Wang; Tandy J. Warnow (J. Comput. Syst. Sci., 2002)

Scaling up accurate phylogenetic reconstruction from gene-order data. - Jijun Tang; Bernard M. E. Moret (ISMB (Supplement of Bioinformatics), 2003)

Phylogenetic Reconstruction from Gene-Rearrangement Data with Unequal Gene Content. - Jijun Tang; Bernard M. E. Moret (WADS, 2003)

Phylogenetic Reconstruction from Arbitrary Gene-Order Data. - Jijun Tang; Bernard M. E. Moret; Liying Cui; Claude W. dePamphilis (BIBE, 2004)

Improving Genome Rearrangement Phylogeny Using Sequence-Style Parsimony. - Jijun Tang; Li-San Wang (BIBE, 2005)

Quartet-Based Phylogeny Reconstruction from Gene Orders. - Tao Liu; Jijun Tang; Bernard M. E. Moret (COCOON, 2005)

Linear Programming for Phylogenetic Reconstruction Based on Gene Rearrangements. - Jijun Tang; Bernard M. E. Moret (CPM, 2005)

Inferring Ancestral Chloroplast Genomes with Inverted Repea. - Liying Cui; Feng Yue; Claude W. dePamphilis; Bernard M. E. Moret; Jijun Tang (BIOCOMP, 2006)

Succinct Text Indexes on Large Alphabet. - Meng Zhang 006; Jijun Tang; Dong Guo 002; Liang Hu 001; Qiang Li 008 (TAMC, 2006)

Reconstructing phylogenies from gene-content and gene-order data. - Bernard M. E. Moret; Jijun Tang; Tandy J. Warnow (Mathematics of Evolution and Phylogeny, 2007)

FPGA Acceleration of Phylogeny Reconstruction for Whole Genome Data. - Jason D. Bakos; Panormitis E. Elenis; Jijun Tang (BIBE, 2007)

A Heuristic for Phylogenetic Reconstruction Using Transposition. - Feng Yue; Meng Zhang 006; Jijun Tang (BIBE, 2007)

A Divide-and-Conquer Implementation of Three Sequence Alignment and Ancestor Inference. - Feng Yue; Jijun Tang (BIBM, 2007)

Three Sequence Alignment and Ancestor Inference with Affine Gap Costs. - Feng Yue; Jijun Tang (BIOCOMP, 2007)

A Fast 3D Correspondence Method for Statistical Shape Modeling. - Pahal Dalal; Brent C. Munsell; Song Wang 002; Jijun Tang; Kenton Oliver; Hiroaki Ninomiya; Xiangrong Zhou; Hiroshi Fujita 001 (CVPR, 2007)

Improving Inversion Median Computation Using Commuting Reversals and Cycle Information. - William Arndt; Jijun Tang (RECOMB-CG, 2007)

Improving Tree Search in Phylogenetic Reconstruction from Genome Rearrangement Data. - Fei Ye; Yan Guo; Andrew Lawson; Jijun Tang (WEA, 2007)

Phylogenetic Reconstruction from Complete Gene Orders of Whole Genomes. - Krister M. Swenson; William Arndt; Jijun Tang; Bernard M. E. Moret (APBC, 2008)

Phylogenetic reconstruction with disk-covering and Bayesian approaches. - Yan Guo; Fei Ye; Jijun Tang (BIBE, 2008)

A New Approach for Tree Alignment Based on Local Re-Optimization. - Feng Yue; Jijun Tang (BMEI (1), 2008)

A Branch-and-Bound Method for the Multichromosomal Reversal Median Problem. - Meng Zhang 006; William Arndt; Jijun Tang (WABI, 2008)

Improving Reversal Median Computation Using Commuting Reversals and Cycle Information. - William Arndt; Jijun Tang (J. Comput. Biol., 2008)

An Exact Solver for the DCJ Median Problem. - Meng Zhang 006; William Arndt; Jijun Tang (Pacific Symposium on Biocomputing, 2009)

Maximum independent sets of commuting and noninterfering inversions. - Krister M. Swenson; Yokuki To; Jijun Tang; Bernard M. E. Moret (BMC Bioinform., 2009)

Simultaneous phylogeny reconstruction and multiple sequence alignment. - Feng Yue; Jian Shi; Jijun Tang (BMC Bioinform., 2009)

A space-efficient algorithm for three sequence alignment and ancestor inference. - Feng Yue; Jijun Tang (Int. J. Data Min. Bioinform., 2009)

Phylogenetic reconstruction with gene rearrangements and gene losses. - Yiwei Zhang; Fei Hu; Jijun Tang (BIBM, 2010)

Matching a Set of Patterns with Wildcards. - Meng Zhang 006; Yi Zhang 031; Jijun Tang (PAAP, 2010)

Genome3D: A viewer-model framework for integrating and visualizing multi-scale epigenomic information within a three-dimensional genome. - Thomas M. Asbury; Matt Mitman; Jijun Tang; W. Jim Zheng (BMC Bioinform., 2010)

Using jackknife to assess the quality of gene order phylogenies. - Jian Shi; Yiwei Zhang; Haiwei Luo; Jijun Tang (BMC Bioinform., 2010)

Lost in the Middle Kingdom: a second language acquisition video game. - Jeremiah J. Shepherd; Renaldo J. Doe; Matthew Arnold; Nancy Cheek; Yun Zhu; Jijun Tang (ACM Southeast Regional Conference, 2011)

Genome3D: A viewer-model framework for integrating and visualizing multi-scale epigenomic information within a three-dimensional genome. - William Arndt; Thomas M. Asbury; W. Jim Zheng; Matt Mitman; Jijun Tang (BIBM Workshops, 2011)

Emulating Insertion and Deletion Events in Genome Rearrangement Analysis. - William Arndt; Jijun Tang (BIBM, 2011)

Maximum likelihood phylogenetic reconstruction using gene order encodings. - Fei Hu; Nan Gao; Meng Zhang 006; Jijun Tang (CIBCB, 2011)

Isolating - a new resampling method for gene order data. - Jian Shi; William Arndt; Fei Hu; Jijun Tang (CIBCB, 2011)

A different approach to teaching Chinese through serious games. - Jeremiah J. Shepherd; Renaldo J. Doe; Matthew Arnold; Yun Zhu; Jijun Tang (FDG, 2011)

Multi-pattern Matching with Wildcards. - Meng Zhang 006; Yi Zhang 031; Jijun Tang; Xiaolong Bai (J. Softw., 2011)

A mixture framework for inferring ancestral gene orders. - Yiwei Zhang; Fei Hu; Jijun Tang (BMC Genom., 2012)

Label-Guided Graph Exploration with Adjustable Ratio of Labels - Meng Zhang 006; Yi Zhang 031; Jijun Tang (CoRR, 2012)

Label-Guided Graph Exploration with Adjustable Ratio of Labels. - Liang Hu 001; Meng Zhang 006; Yi Zhang 031; Jijun Tang (Int. J. Found. Comput. Sci., 2012)

Rearrangements in Phylogenetic Inference: Compare, Model, or Encode? - Bernard M. E. Moret; Yu Lin 001; Jijun Tang (Models and Algorithms for Genome Evolution, 2013)

Exploring genomes with a game engine. - Jeremiah J. Shepherd; Lingxi Zhou; Yan Zhang; W. Jim Zheng; Jijun Tang (BIBM, 2013)

Exploring genomes with a game engine. - Jeremiah J. Shepherd; Bill Arndt; W. Jim Zheng; Yun Zhu; Jijun Tang (FDG, 2013)

Streaming Breakpoint Graph Analytics for Accelerating and Parallelizing the Computation of DCJ Median of Three Genomes. - Zhaoming Yin; Jijun Tang; Stephen W. Schaeffer; David A. Bader (ICCS, 2013)

Reconstructing Ancestral Genomic Orders Using Binary Encoding and Probabilistic Models. - Fei Hu; Lingxi Zhou; Jijun Tang (ISBRA, 2013)

Maximum Likelihood Phylogenetic Reconstruction from High-Resolution Whole-Genome Data and a Tree of 68 Eukaryotes. - Yu Lin 001; Fei Hu; Jijun Tang; Bernard M. E. Moret (Pacific Symposium on Biocomputing, 2013)

Assessing ancestral genome reconstruction methods by resampling. - Jun Zhou; Fei Hu; William Hoskins; Jijun Tang (BIBM, 2014)

A Lin-Kernighan Heuristic for the DCJ Median Problem of Genomes with Unequal Contents. - Zhaoming Yin; Jijun Tang; Stephen W. Schaeffer; David A. Bader (COCOON, 2014)

GSO: A Semantic Web Ontology to Capture 3D Genome Structure. - W. Jim Zheng; Jingcheng Du; Jijun Tang; Cui Tao (SWAT4LS, 2014)

MLGO: phylogeny reconstruction and ancestral inference from gene-order data. - Fei Hu; Yu Lin 001; Jijun Tang (BMC Bioinform., 2014)

Probabilistic Reconstruction of Ancestral Gene Orders with Insertions and Deletions. - Fei Hu; Jun Zhou; Lingxi Zhou; Jijun Tang (IEEE ACM Trans. Comput. Biol. Bioinform., 2014)

Ancestral reconstruction under weighted maximum matching. - Lingxi Zhou; William Hoskins; Jieyi Zhao; Jijun Tang (BIBM, 2015)

An Iterative Approach for Phylogenetic Analysis of Tumor Progression Using FISH Copy Number. - Jun Zhou; Yu Lin 001; William Hoskins; Jijun Tang (ISBRA, 2015)

Maximum Parsimony Analysis of Gene Copy Number Changes. - Jun Zhou; Yu Lin 001; Vaibhav Rajan; William Hoskins; Jijun Tang (WABI, 2015)

Identification of Protein-Protein Interactions by Detecting Correlated Mutation at the Interface. - Fei Guo 001; Yijie Ding; Zhao Li; Jijun Tang (J. Chem. Inf. Model., 2015)

A Cooperative Co-Evolutionary Genetic Algorithm for Tree Scoring and Ancestral Genome Inference. - Nan Gao; Yan Zhang; Bing Feng; Jijun Tang (IEEE ACM Trans. Comput. Biol. Bioinform., 2015)

Analysis of gene copy number changes in tumor phylogenetics. - Jun Zhou; Yu Lin 001; Vaibhav Rajan; William Hoskins; Bing Feng; Jijun Tang (Algorithms Mol. Biol., 2016)

Predicting protein-protein interactions via multivariate mutual information of protein sequences. - Yijie Ding; Jijun Tang; Fei Guo 001 (BMC Bioinform., 2016)

Pretata: predicting TATA binding proteins with novel features and dimensionality reduction strategy. - Quan Zou 001; Shixiang Wan; Ying Ju; Jijun Tang; Xiangxiang Zeng (BMC Syst. Biol., 2016)

Guest Editorial for the 14th Asia Pacific Bioinformatics Conference (APBC2016). - Jijun Tang; Lu Tian; Yi-Ping Phoebe Chen (Comput. Biol. Chem., 2016)

Learning from real imbalanced data of 14-3-3 proteins binding specificity. - Zhao Li; Jijun Tang; Fei Guo 001 (Neurocomputing, 2016)

Exemplar or matching: modeling DCJ problems with unequal content genome data. - Zhaoming Yin; Jijun Tang; Stephen W. Schaeffer; David A. Bader (J. Comb. Optim., 2016)

Down syndrome prediction/screening model based on deep learning and illumina genotyping array. - Bing Feng; David C. Samuels; William Hoskins; Yan Guo; Yan Zhang; Jijun Tang; Zibo Meng (BIBM, 2017)

HiCComp: Multiple-level comparative analysis of Hi-C data by triplet network. - Yan Zhang; Bo Zhang; W. Jim Zheng; Jijun Tang; Feng Yue (BIBM, 2017)

A Median Solver and Phylogenetic Inference Based on DCJ Sorting. - Ruofan Xia; Jun Zhou; Lingxi Zhou; Bing Feng; Jijun Tang (ISBRA, 2017)

Improvement of phylogenetic method to analyze compositional heterogeneity. - Zehua Zhang; Kecheng Guo; Gaofeng Pan; Jijun Tang; Fei Guo 001 (BMC Syst. Biol., 2017)

Identification of drug-target interactions via multiple information integration. - Yijie Ding; Jijun Tang; Fei Guo 001 (Inf. Sci., 2017)

Local-DPP: An improved DNA-binding protein prediction method by exploring local evolutionary information. - Leyi Wei; Jijun Tang; Quan Zou 001 (Inf. Sci., 2017)

Identification of Protein-Ligand Binding Sites by Sequence Information and Ensemble Classifier. - Yijie Ding; Jijun Tang; Fei Guo 001 (J. Chem. Inf. Model., 2017)

Detecting complexes from edge-weighted PPI networks via genes expression analysis. - Zehua Zhang; Jian Song; Jijun Tang; Xinying Xu; Fei Guo 001 (BMC Syst. Biol., 2018)

A computational approach for examining the roots and spreading patterns of fake news: Evolution tree analysis. - S. Mo Jang; Tieming Geng; Jo-Yun Queenie Li; Ruofan Xia; Chin-Tser Huang; Hwalbin Kim; Jijun Tang (Comput. Hum. Behav., 2018)

A flexible approach to reconstruct the genomic spatial structure by the genetic algorithm. - Yan Zhang; William Hoskins; Ruofan Xia; Xiya Xia; Jim W. Zheng; Jijun Tang (Int. J. Comput. Biol. Drug Des., 2018)

A Median Solver and Phylogenetic Inference Based on Double-Cut-and-Join Sorting. - Ruofan Xia; Yu Lin 001; Jun Zhou; Bing Feng; Jijun Tang (J. Comput. Biol., 2018)

Prediction of human protein subcellular localization using deep learning. - Leyi Wei; Yijie Ding; Ran Su; Jijun Tang; Quan Zou 001 (J. Parallel Distributed Comput., 2018)

Guest Editorial for the 14th Asia Pacific Bioinformatics Conference. - Jijun Tang; Lu Tian; Yi-Ping Phoebe Chen (IEEE ACM Trans. Comput. Biol. Bioinform., 2018)

Identification of DNA-Binding Proteins via Fuzzy Multiple Kernel Model and Sequence Information. - Yijie Ding; Jijun Tang; Fei Guo 001 (ICIC (2), 2019)

The Application of Machine Learning Algorithms to Diagnose CKD Stages and Identify Critical Metabolites Features. - Bing Feng; Ying-Yong Zhao; Jiexi Wang; Hui Yu; Shiva Potu; Jiandong Wang; Jijun Tang; Yan Guo (IWBBIO (1), 2019)

LPI-KTASLP: Prediction of LncRNA-Protein Interaction by Semi-Supervised Link Learning With Multivariate Information. - Cong Shen; Yijie Ding; Jijun Tang; Limin Jiang; Fei Guo 001 (IEEE Access, 2019)

Identifying protein-protein interface via a novel multi-scale local sequence and structural representation. - Fei Guo 001; Quan Zou 001; Guang Yang; Dan Wang; Jijun Tang; Junhai Xu (BMC Bioinform., 2019)

Identification of drug-side effect association via multiple information integration with centered kernel alignment. - Yijie Ding; Jijun Tang; Fei Guo 001 (Neurocomputing, 2019)

Phylogenetic Reconstruction for Copy-Number Evolution Problems. - Ruofan Xia; Yu Lin 001; Jun Zhou; Tieming Geng; Bing Feng; Jijun Tang (IEEE ACM Trans. Comput. Biol. Bioinform., 2019)

Identification of Drug-Side Effect Association via Semisupervised Model and Multiple Kernel Learning. - Yijie Ding; Jijun Tang; Fei Guo 001 (IEEE J. Biomed. Health Informatics, 2019)

Melanoma Classification in Dermoscopy Images via Ensemble Learning on Deep Neural Network. - Jie Song; Jiawei Li 018; Shiqiang Ma; Jijun Tang; Fei Guo 001 (BIBM, 2020)

An two-layer predictive model of ensemble classifier chain for detecting antimicrobial peptides. - Jinhao Zhang; Shuhao Li; Yijie Ding; Jijun Tang; Fei Guo 001 (BIBM, 2020)

A Deep Supervision CNN Network for Brain Tumor Segmentation. - Shiqiang Ma; Zehua Zhang; Jiaqi Ding; Xuejian Li; Jijun Tang; Fei Guo 001 (BrainLes@MICCAI (2), 2020)

Human protein subcellular localization identification via fuzzy model on Kernelized Neighborhood Representation. - Yijie Ding; Jijun Tang; Fei Guo 001 (Appl. Soft Comput., 2020)

Critical evaluation of web-based prediction tools for human protein subcellular localization. - Yinan Shen; Yijie Ding; Jijun Tang; Quan Zou 001; Fei Guo 001 (Briefings Bioinform., 2020)

Achieving large and distant ancestral genome inference by using an improved discrete quantum-behaved particle swarm optimization algorithm. - Zhaojuan Zhang; Wanliang Wang; Ruofan Xia; Gaofeng Pan; Jiandong Wang; Jijun Tang (BMC Bioinform., 2020)

Identification of human microRNA-disease association via hypergraph embedded bipartite local model. - Yijie Ding; Limin Jiang; Jijun Tang; Fei Guo 001 (Comput. Biol. Chem., 2020)

Identification of membrane protein types via multivariate information fusion with Hilbert-Schmidt Independence Criterion. - Hao Wang; Yijie Ding; Jijun Tang; Fei Guo 001 (Neurocomputing, 2020)

Identification of Highest-Affinity Binding Sites of Yeast Transcription Factor Families. - Zongyu Wang; Wenying He; Jijun Tang; Fei Guo 001 (J. Chem. Inf. Model., 2020)

Identification of Drug-Target Interactions via Dual Laplacian Regularized Least Squares with Multiple Kernel Fusion. - Yijie Ding; Jijun Tang; Fei Guo 001 (Knowl. Based Syst., 2020)

Identification of drug-target interactions via fuzzy bipartite local model. - Yijie Ding; Jijun Tang; Fei Guo 001 (Neural Comput. Appl., 2020)

DeepAVP: A Dual-Channel Deep Neural Network for Identifying Variable-Length Antiviral Peptides. - Jiawei Li 018; Yuqian Pu; Jijun Tang; Quan Zou 001; Fei Guo 001 (IEEE J. Biomed. Health Informatics, 2020)

Document-level DDI relation extraction with document-entity embedding. - Mingliang Dou; Jijun Tang; Fei Guo 001 (BIBM, 2021)

MIASNet: A medical image segmentation method predicting future based on past and current cases. - Shiqiang Ma; Xuejian Li; Jijun Tang; Fei Guo 001 (BIBM, 2021)

GEU-Net: Rethinking the information transmission in the skip connection of U-Net architecture. - Shiqiang Ma; Xuejian Li; Zehua Zhang; Jijun Tang; Fei Guo 001 (BIBM, 2021)

Multi-AMP: detecting the antimicrobial peptides and their activities using the multi-task learning. - Qiaozhen Meng; Jijun Tang; Fei Guo 001 (BIBM, 2021)

Membrane Protein Identification via Multi-view Graph Regularized k-Local Hyperplane Distance Nearest Neighbor Model. - Mengwei Sun; Yuqing Qian; Yijie Ding; Jijun Tang; Quan Zou 001 (BIBM, 2021)

RCGA-Net: An Improved Multi-hybrid Attention Mechanism Network in Biomedical Image Segmentation. - Feng Xiao 005; Cong Shen; Yu Chen; Tian Yang; Shengyong Chen; Zhijun Liao; Jijun Tang (BIBM, 2021)

A Zero-Shot Method for 3D Medical Image Segmentation. - Shiqiang Ma; Xuejian Li; Jijun Tang; Fei Guo 001 (ICME, 2021)

IEEE Access Special Section Editorial: Feature Representation and Learning Methods With Applications in Large-Scale Biological Sequence Analysis. - Feifei Cui; Quan Zou 001; Qin Ma 003; Leyi Wei; Jijun Tang; Dariusz Mrozek (IEEE Access, 2021)

Drug-disease associations prediction via Multiple Kernel-based Dual Graph Regularized Least Squares. - Hongpeng Yang; Yijie Ding; Jijun Tang; Fei Guo 001 (Appl. Soft Comput., 2021)

MMFGRN: a multi-source multi-model fusion method for gene regulatory network reconstruction. - Wenying He; Jijun Tang; Quan Zou 001; Fei Guo 001 (Briefings Bioinform., 2021)

Predicting MHC class I binder: existing approaches and a novel recurrent neural network solution. - Limin Jiang; Hui Yu; Jiawei Li 018; Jijun Tang; Yan Guo; Fei Guo 001 (Briefings Bioinform., 2021)

DeepATT: a hybrid category attention neural network for identifying functional effects of DNA sequences. - Jiawei Li 018; Yuqian Pu; Jijun Tang; Quan Zou 001; Fei Guo 001 (Briefings Bioinform., 2021)

Exploring associations of non-coding RNAs in human diseases via three-matrix factorization with hypergraph-regular terms on center kernel alignment. - Hao Wang; Jijun Tang; Yijie Ding; Fei Guo 001 (Briefings Bioinform., 2021)

Exploring effectiveness of ab-initio protein-protein docking methods on a novel antibacterial protein complex dataset. - Wei Zhang; Qiaozhen Meng; Jijun Tang; Fei Guo 001 (Briefings Bioinform., 2021)

A comprehensive overview and critical evaluation of gene regulatory network inference technologies. - Mengyuan Zhao; Wenying He; Jijun Tang; Quan Zou 001; Fei Guo 001 (Briefings Bioinform., 2021)

Predicting subcellular location of protein with evolution information and sequence-based deep learning. - Zhijun Liao; Gaofeng Pan; Chao Sun; Jijun Tang (BMC Bioinform., 2021)

A sequence-based multiple kernel model for identifying DNA-binding proteins. - Yuqing Qian; Limin Jiang; Yijie Ding; Jijun Tang; Fei Guo 001 (BMC Bioinform., 2021)

Identification of drug-target interactions via multi-view graph regularized link propagation model. - Yijie Ding; Jijun Tang; Fei Guo 001 (Neurocomputing, 2021)

Granular multiple kernel learning for identifying RNA-binding protein residues via integrating sequence and structure information. - Chao Yang; Yijie Ding; Qiaozhen Meng; Jijun Tang; Fei Guo 001 (Neural Comput. Appl., 2021)

Protein Crystallization Identification via Fuzzy Model on Linear Neighborhood Representation. - Yijie Ding; Jijun Tang; Fei Guo 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2021)

CrystalM: A Multi-View Fusion Approach for Protein Crystallization Prediction. - Yubo Wang; Yijie Ding; Jijun Tang; Yu Dai 005; Fei Guo 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2021)

AIEpred: An Ensemble Predictive Model of Classifier Chain to Identify Anti-Inflammatory Peptides. - Jinhao Zhang; Zehua Zhang; Lianrong Pu; Jijun Tang; Fei Guo 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2021)

Multi-Scale Time-Series Kernel-Based Learning Method for Brain Disease Diagnosis. - Zehua Zhang; Jiaqi Ding; Junhai Xu; Jijun Tang; Fei Guo 001 (IEEE J. Biomed. Health Informatics, 2021)

BP-DDI: Drug-drug interaction prediction based on biological information and pharmacological text. - Mingliang Dou; Han Han; Genlang Chen; Fei Guo 001; Jijun Tang (BIBM, 2022)

Integrating Prior Knowledge with Graph Encoder for Gene Regulatory Inference from Single-cell RNA-Seq Data. - Jiawei Li 018; Fan Yang 081; Fang Wang 028; Yu Rong 001; Peilin Zhao; Shizhan Chen; Jianhua Yao 001; Jijun Tang; Fei Guo 001 (BIBM, 2022)

Multi-scale Neighborhood Attention Transformer on U-Net for Medical Image Segmentation. - Nanxing Zhang; Shiqiang Ma; Xuejian Li; Jiahui Zhang; Jijun Tang; Fei Guo 001 (BIBM, 2022)

Identification of protein-nucleotide binding residues via graph regularized k-local hyperplane distance nearest neighbor model. - Yijie Ding; Chao Yang; Jijun Tang; Fei Guo 001 (Appl. Intell., 2022)

Identification of DNA N4-methylcytosine sites via fuzzy model on self representation. - Leyao Wang; Yijie Ding; Junhai Xu; Wenhuan Lu; Jijun Tang; Fei Guo 001 (Appl. Soft Comput., 2022)

Identification of drug-target interactions via multiple kernel-based triple collaborative matrix factorization. - Yijie Ding; Jijun Tang; Fei Guo 001; Quan Zou 001 (Briefings Bioinform., 2022)

Two-stage-vote ensemble framework based on integration of mutation data and gene interaction network for uncovering driver genes. - Yingxin Kan; Limin Jiang; Yan Guo; Jijun Tang; Fei Guo 001 (Briefings Bioinform., 2022)

A hybrid deep learning framework for gene regulatory network inference from single-cell transcriptomic data. - Mengyuan Zhao; Wenying He; Jijun Tang; Quan Zou 001; Fei Guo 001 (Briefings Bioinform., 2022)

Inferring gene regulatory network via fusing gene expression image and RNA-seq data. - Xuejian Li; Shiqiang Ma; Jin Liu 012; Jijun Tang; Fei Guo 001 (Bioinform., 2022)

BAT-Net: An enhanced RNA Secondary Structure prediction via bidirectional GRU-based network with attention mechanism. - Cong Shen; Yu Chen; Feng Xiao 005; Tian Yang; Xinyue Wang; Shengyong Chen; Jijun Tang; Zhijun Liao (Comput. Biol. Chem., 2022)

TranSiam: Fusing Multimodal Visual Features Using Transformer for Medical Image Segmentation. - Xuejian Li; Shiqiang Ma; Jijun Tang; Fei Guo 001 (CoRR, 2022)

EAA-Net: Rethinking the Autoencoder Architecture with Intra-class Features for Medical Image Segmentation. - Shiqiang Ma; Xuejian Li; Jijun Tang; Fei Guo 001 (CoRR, 2022)

A multi-layer multi-kernel neural network for determining associations between non-coding RNAs and diseases. - Chengwei Ai; Hongpeng Yang; Yijie Ding; Jijun Tang; Fei Guo 001 (Neurocomputing, 2022)

Inferring human microbe-drug associations via multiple kernel fusion on graph neural network. - Hongpeng Yang; Yijie Ding; Jijun Tang; Fei Guo 001 (Knowl. Based Syst., 2022)

Res2Unet: A multi-scale channel attention network for retinal vessel segmentation. - Xuejian Li; Jiaqi Ding; Jijun Tang; Fei Guo 001 (Neural Comput. Appl., 2022)

DeepFusionDTA: Drug-Target Binding Affinity Prediction With Information Fusion and Hybrid Deep-Learning Ensemble Model. - Yuqian Pu; Jiawei Li 018; Jijun Tang; Fei Guo 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)

Identify ncRNA Subcellular Localization via Graph Regularized $k$k-Local Hyperplane Distance Nearest Neighbor Model on Multi-Kernel Learning. - Haohao Zhou; Hao Wang; Jijun Tang; Yijie Ding; Fei Guo 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)

BTCN: Bridging the Gap Between Pre-trained and Downstream Models for Endoscopic Caries Detection. - Nan Gao; Peng Chen 008; Yukai Li; Jijun Tang; Ronghua Liang; Tianshuang Liu (BIBM, 2023)

MixUNet: Mix the 2D and 3D Models for Robust Medical Image Segmentation. - Jiawei Li 018; Shizhan Chen; Shiqiang Ma; Fei Guo 001; Jijun Tang (BIBM, 2023)

Prediction of LncRNA-Protein Interactions Based on Multi-kernel Fusion and Graph Auto-Encoders. - Dongdong Mao; Cong Shen; Ruilin Wu; Yuyang Han; Yankai Wu; Jinxuan Wang; Jijun Tang; Zhijun Liao (ICIC (3), 2023)

DETA-Net: A Dual Encoder Network with Text-Guided Attention Mechanism for Skin-Lesions Segmentation. - Cong Shen; Xinyue Wang; Jijun Tang; Zhijun Liao (ICIC (3), 2023)

A multi-scale multi-model deep neural network via ensemble strategy on high-throughput microscopy image for protein subcellular localization. - Jiaqi Ding; Junhai Xu; Jianguo Wei; Jijun Tang; Fei Guo 001 (Expert Syst. Appl., 2023)

Boosting Short Text Classification by Solving the OOV Problem. - Nan Gao; Yongjian Wang; Peng Chen 008; Jijun Tang (IEEE ACM Trans. Audio Speech Lang. Process., 2023)

Low Rank Matrix Factorization Algorithm Based on Multi-Graph Regularization for Detecting Drug-Disease Association. - Chengwei Ai; Hongpeng Yang; Yijie Ding; Jijun Tang; Fei Guo 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2023)

Laplacian Regularized Sparse Representation Based Classifier for Identifying DNA N4-Methylcytosine Sites via $L_{2,1/2}$L2,1/2-Matrix Norm. - Yijie Ding; Wenying He; Jijun Tang; Quan Zou 001; Fei Guo 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2023)

CoMutDB: the landscape of somatic mutation co-occurrence in cancers. - Limin Jiang; Hui Yu; Jijun Tang; Yan Guo (Bioinform., 2023)

IK-DDI: a novel framework based on instance position embedding and key external text for DDI extraction. - Mingliang Dou; Jiaqi Ding; Genlang Chen; Junwen Duan; Fei Guo 001; Jijun Tang (Briefings Bioinform., 2023)

Improved structure-related prediction for insufficient homologous proteins using MSA enhancement and pre-trained language model. - Qiaozhen Meng; Fei Guo 001; Jijun Tang (Briefings Bioinform., 2023)

MVML-MPI: Multi-View Multi-Label Learning for Metabolic Pathway Inference. - Xiaoyi Liu; Hongpeng Yang; Chengwei Ai; Yijie Ding; Fei Guo 001; Jijun Tang (Briefings Bioinform., 2023)

Identification of DNA N4-methylcytosine Sites via Multiview Kernel Sparse Representation Model. - Chengwei Ai; Prayag Tiwari; Hongpeng Yang; Yijie Ding; Jijun Tang; Fei Guo 001 (IEEE Trans. Artif. Intell., 2023)

ComDock: A novel approach for protein-protein docking with an efficient fusing strategy. - Qiaozhen Meng; Fei Guo 001; Ercheng Wang; Jijun Tang (Comput. Biol. Medicine, 2023)

ACPNet: Enhancing Small-Scale Dieases Detection in Panoramic X-rays. - Nan Gao; Junchao Zhu; Peng Chen; Jijun Tang; Feng Jiang; Ronghua Liang (BIBM, 2024)

Multi-Task Driven Multi-Level Dynamical Fusion for Single-Cell Multi-Omics Cell Type Annotation. - Jiawei Li 018; Shizhan Chen; Zongbo Han; Wei Li; Jijun Tang; Fei Guo 001 (BIBM, 2024)

scCADE: A Superior Tool for Predicting Perturbation Responses in Single-Cell Gene Expression Using Contrastive Learning and Attention Mechanisms. - Jingfeng Ou; Jiawei Li; Zhiliang Xia; Shurui Dai; Yulian Ding; Yan Guo; Limin Jiang; Jijun Tang (BIBM, 2024)

SiamSegNet: A multimodal Segmentation Method Based on Cross-modal Generation for Medical Image Segmentation. - Shiqiang Ma; Fei Guo 001; Jijun Tang (DASFAA (3), 2024)

CUK-Band: A CUDA-Based Multiple Genomic Sequence Alignment on GPU. - Xianghua Kong; Cong Shen; Jijun Tang (ICIC (LNBI 2), 2024)

Dual-Channel Reliable Breast Ultrasound Image Classification Based on Explainable Attribution and Uncertainty Quantification. - Haonan Hu; Shuge Lei; Desheng Sun; Huabin Zhang; Kehong Yuan; Jian Dai; Jijun Tang; Yan Tong; Qiongyu Ye (IPMV, 2024)

Aggregate-aware model with bidirectional edge generation for medical image segmentation. - Shiqiang Ma; Xuejian Li; Jijun Tang; Fei Guo 001 (Appl. Soft Comput., 2024)

GFDet: Multi-Level Feature Fusion Network for Caries Detection Using Dental Endoscope Images. - Nan Gao; Yukai Li; Peng Chen 008; Jijun Tang; Tianshuang Liu (Big Data Min. Anal., 2024)

EPIMR: Prediction of Enhancer-Promoter Interactions by Multi-Scale ResNet on Image Representation. - Qiaozhen Meng; Yinuo Lyu; Xiaoqing Peng; Junhai Xu; Jijun Tang; Fei Guo 001 (Big Data Min. Anal., 2024)

Dual-Channel Reliable Breast Ultrasound Image Classification Based on Explainable Attribution and Uncertainty Quantification. - Shuge Lei; Haonan Hu; Dasheng Sun; Huabin Zhang; Kehong Yuan; Jian Dai; Jijun Tang; Yan Tong (CoRR, 2024)

A generalizable framework for unlocking missing reactions in genome-scale metabolic networks using deep learning. - Xiaoyi Liu; Hongpeng Yang; Chengwei Ai; Ruihan Dong; Yijie Ding; Qianqian Yuan; Jijun Tang; Fei Guo 001 (CoRR, 2024)

Comprehensive cross cancer analyses reveal mutational signature cancer specificity. - Rui Xin; Limin Jiang; Hui Yu; Fengyao Yan; Jijun Tang; Yan Guo (Quant. Biol., 2024)

PPRTGI: A Personalized PageRank Graph Neural Network for TF-Target Gene Interaction Detection. - Ke Ma; Jiawei Li 018; Mengyuan Zhao; Ibrahim Zamit; Bin Lin; Fei Guo 001; Jijun Tang (IEEE ACM Trans. Comput. Biol. Bioinform., 2024)

DMAMP: A Deep-Learning Model for Detecting Antimicrobial Peptides and Their Multi-Activities. - Qiaozhen Meng; Genlang Chen; Bin Lin; Shixin Zheng; Yulai Lin; Jijun Tang; Fei Guo 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2024)

TranSiam: Aggregating multi-modal visual features with locality for medical image segmentation. - Xuejian Li; Shiqiang Ma; Junhai Xu; Jijun Tang; Shengfeng He; Fei Guo 001 (Expert Syst. Appl., 2024)

Prediction of LncRNA-Protein Interactions Based on Kernel Combinations and Graph Convolutional Networks. - Cong Shen; Dongdong Mao; Jijun Tang; Zhijun Liao; Shengyong Chen (IEEE J. Biomed. Health Informatics, 2024)

Drug-Drug Interaction Relation Extraction Based on Deep Learning: A Review. - Mingliang Dou; Jijun Tang; Prayag Tiwari; Yijie Ding; Fei Guo 001 (ACM Comput. Surv., 2024)

Multi-granularity semantic relational mapping for image caption. - Nan Gao; Renyuan Yao; Peng Chen 008; Ronghua Liang; Guodao Sun; Jijun Tang (Expert Syst. Appl., 2025)

RFAE: A high-robust feature selector based on fractal autoencoder. - Jingfeng Ou; Jiawei Li 018; Zhiliang Xia; Shurui Dai; Yan Guo; Limin Jiang; Jijun Tang (Expert Syst. Appl., 2025)