PheWAS: demonstrating the feasibility of a phenome-wide scan to discover gene-disease associations. - Joshua C. Denny; Marylyn D. Ritchie; Melissa A. Basford; Jill M. Pulley; Lisa Bastarache; Kristin Brown-Gentry; Deede Wang; Daniel R. Masys; Dan M. Roden; Dana C. Crawford (Bioinform., 2010)

An analytical approach to characterize morbidity profile dissimilarity between distinct cohorts using electronic medical records. - Jonathan S. Schildcrout; Melissa A. Basford; Jill M. Pulley; Daniel R. Masys; Dan M. Roden; Deede Wang; Christopher G. Chute; Iftikhar J. Kullo; David Carrell; Peggy L. Peissig; Abel N. Kho; Joshua C. Denny (J. Biomed. Informatics, 2010)

Facilitating pharmacogenetic studies using electronic health records and natural-language processing: a case study of warfarin. - Hua Xu 001; Min Jiang 007; Matthew Oetjens; Erica A. Bowton; Andrea H. Ramirez; Janina M. Jeff; Melissa A. Basford; Jill M. Pulley; James D. Cowan; Xiaoming Wang; Marylyn D. Ritchie; Daniel R. Masys; et al. (J. Am. Medical Informatics Assoc., 2011)

StarBRITE: The Vanderbilt University Biomedical Research Integration, Translation and Education portal. - Paul A. Harris; Jonathan A. Swafford; Terri L. Edwards; Minhua Zhang; Shraddha S. Nigavekar; Tonya R. Yarbrough; Lynda D. Lane; Tara Helmer; Laurie A. Lebo; Gail Mayo; Daniel R. Masys; Gordon R. Bernard; et al. (J. Biomed. Informatics, 2011)

Brief communication: The Mid-South Clinical Data Research Network. - S. Trent Rosenbloom; Paul A. Harris; Jill M. Pulley; Melissa A. Basford; Jason Grant; Allison DuBuisson; Russell L. Rothman (J. Am. Medical Informatics Assoc., 2014)

PheWAS Network Analysis and Visualization. - Yaomin Xu; Todd L. Edwards; Lisa Bastarache; Rebecca N. Jerome; Shilin Zho; Eric Torstenson; Wei-Qi Wei; Jana Shirey-Rice; Erica A. Bowton; Yu Shyr; Jill M. Pulley; Joshua C. Denny (AMIA, 2015)

Large-Scale Text Mining of Social Determinants from Electronic Health Records: Case Studies of Homelessness and Adverse Childhood Experiences. - Cosmin Adrian Bejan; John Angiolillo; Douglas Conway; Robertson Nash; Jana Shirey-Rice; Loren Lipworth-Elliot; Robert M. Cronin; Jill M. Pulley; Sunil Kripalani; Shari Barkin; Kevin B. Johnson; Joshua C. Denny (AMIA, 2017)

Development and Testing of Participant Provided Information Modules for the Precision Medicine Initiative. - Robert M. Cronin; Rebecca N. Jerome; Brandy Mapes; Kathryn Goggins; Ken Wallston; Katharine Donato; Mick P. Couper; Michael R. Elliott; Charles P. Mouton; Kemberlee Bonnet; Ezer Benaim; Jordan Sinclair; et al. (CRI, 2017)

Systematically Prioritizing Targets in Genome-Based Drug Repurposing. - Anup P. Challa; Robert R. Lavieri; Judith T. Lewis; Nicole M. Zaleski; Jana K. Shirey-Rice; Paul A. Harris; Jill M. Pulley (BCB, 2018)

Mining 100 million notes to find homelessness and adverse childhood experiences: 2 case studies of rare and severe social determinants of health in electronic health records. - Cosmin Adrian Bejan; John Angiolillo; Douglas Conway; Robertson Nash; Jana Shirey-Rice; Loren Lipworth-Elliot; Robert M. Cronin; Jill M. Pulley; Sunil Kripalani; Shari Barkin; Kevin B. Johnson; Joshua C. Denny (J. Am. Medical Informatics Assoc., 2018)

PheWAS-ME: a web-app for interactive exploration of multimorbidity patterns in PheWAS. - Nick Strayer; Jana K. Shirey-Rice; Yu Shyr; Joshua C. Denny; Jill M. Pulley; Yaomin Xu (Bioinform., 2021)

Interactive network-based clustering and investigation of multimorbidity association matrices with associationSubgraphs. - Nick Strayer; Siwei Zhang; Lydia Yao; Tess Vessels; Cosmin Adrian Bejan; Ryan S. Hsi; Jana K. Shirey-Rice; Justin M. Balko; Douglas B. Johnson; Elizabeth J. Phillips; Alex Bick; Todd L. Edwards; et al. (Bioinform., 2023)

PheMIME: an interactive web app and knowledge base for phenome-wide, multi-institutional multimorbidity analysis. - Siwei Zhang; Nick Strayer; Tess Vessels; Karmel Choi; Geoffrey W. Wang; Yajing Li; Cosmin Adrian Bejan; Ryan S. Hsi; Alex Bick; Digna R. Velez Edwards; Michael R. Savona; Elizabeth J. Phillips; et al. (J. Am. Medical Informatics Assoc., 2024)

Secondary use of radiological imaging data: Vanderbilt's ImageVU approach. - David S. Smith; Karthik Ramadass; Laura M. Jones; Jennifer Morse; Daniel Fabbri; Joseph R. Coco; Shunxing Bao; Melissa A. Basford; Peter J. Embi; Reed A. Omary; John C. Gore; Jill M. Pulley; et al. (J. Biomed. Informatics, 2025)