GenXHC: a probabilistic generative model for cross-hybridization compensation in high-density genome-wide microarray data. - Jim C. Huang; Quaid Morris; Timothy R. Hughes; Brendan J. Frey (ISMB (Supplement of Bioinformatics), 2005)

Detecting MicroRNA Targets by Linking Sequence, MicroRNA and Gene Expression Data. - Jim C. Huang; Quaid Morris; Brendan J. Frey (RECOMB, 2006)

Bayesian association of haplotypes and non-genetic factors to regulatory and phenotypic variation in human populations. - Jim C. Huang; Anitha Kannan; John M. Winn (ISMB/ECCB (Supplement of Bioinformatics), 2007)

Bayesian Inference of MicroRNA Targets from Sequence and Expression Data. - Jim C. Huang; Quaid Morris; Brendan J. Frey (J. Comput. Biol., 2007)

Structured ranking learning using cumulative distribution networks. - Jim C. Huang; Brendan J. Frey (NIPS, 2008)

Comparing Sequence and Expression for Predicting microRNA Targets Using GenMIR3. - Jim C. Huang; Brendan J. Frey; Quaid Morris (Pacific Symposium on Biocomputing, 2008)

Cumulative distribution networks and the derivative-sum-product algorithm. - Jim C. Huang; Brendan J. Frey (UAI, 2008)

Exact inference and learning for cumulative distribution functions on loopy graphs. - Jim C. Huang; Nebojsa Jojic; Christopher Meek (NIPS, 2010)

Maximum-likelihood learning of cumulative distribution functions on graphs. - Jim C. Huang; Nebojsa Jojic (AISTATS, 2010)

STORMSeq: A Method for Ranking Regulatory Sequences by Integrating Experimental Datasets with Diverse Computational Predictions. - Jim C. Huang; Brendan J. Frey (Handbook of Statistical Bioinformatics, 2011)

Variable Selection through Correlation Sifting. - Jim C. Huang; Nebojsa Jojic (RECOMB, 2011)

Cumulative Distribution Networks and the Derivative-sum-product Algorithm: Models and Inference for Cumulative Distribution Functions on Graphs. - Jim C. Huang; Brendan J. Frey (J. Mach. Learn. Res., 2011)

Adaptive Algorithms for Online Convex Optimization with Long-term Constraints. - Rodolphe Jenatton; Jim C. Huang; Cédric Archambeau (ICML, 2016)

Online Dual Decomposition for Performance and Delivery-Based Distributed Ad Allocation. - Jim C. Huang; Rodolphe Jenatton; Cédric Archambeau (KDD, 2016)

Online optimization and regret guarantees for non-additive long-term constraints. - Rodolphe Jenatton; Jim C. Huang; Cédric Archambeau (CoRR, 2016)