Explainability in transformer models for functional genomics. - Jim Clauwaert; Gerben Menschaert; Willem Waegeman (Briefings Bioinform., 2021)

CpG Transformer for imputation of single-cell methylomes. - Gaetan De Waele; Jim Clauwaert; Gerben Menschaert; Willem Waegeman (Bioinform., 2022)

Novel Transformer Networks for Improved Sequence Labeling in genomics. - Jim Clauwaert; Willem Waegeman (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)