A suite of algorithms for the comprehensive analysis of complex protein mixtures using high-resolution LC-MS. - Matthew Bellew; Marc Coram; Matthew Fitzgibbon; Mark Igra; Timothy W. Randolph 002; Pei Wang 014; Damon May; Jimmy K. Eng; Ruihua Fang; ChenWei Lin; Jinzhi Chen; David Goodlett; et al. (Bioinform., 2006)

General framework for developing and evaluating database scoring algorithms using the TANDEM search engine. - Brendan MacLean; Jimmy K. Eng; Ronald C. Beavis; Martin McIntosh (Bioinform., 2006)

The PeptideAtlas project. - Frank Desiere; Eric W. Deutsch; Nichole L. King; Alexey I. Nesvizhskii; Parag Mallick; Jimmy K. Eng; Sharon Chen; James Eddes; Sandra N. Loevenich; Ruedi Aebersold (Nucleic Acids Res., 2006)

XLinkDB 2.0: integrated, large-scale structural analysis of protein crosslinking data. - Devin K. Schweppe; Chunxiang Zheng; Juan D. Chavez; Arti T. Navare; Xia Wu; Jimmy K. Eng; James E. Bruce (Bioinform., 2016)

Sipros Ensemble improves database searching and filtering for complex metaproteomics. - Xuan Guo; Zhou Li; Qiuming Yao; Ryan S. Mueller; Jimmy K. Eng; David L. Tabb; IV William Judson Hervey; Chongle Pan (Bioinform., 2018)