Pairwise RNA secondary structure alignment with conserved stem pattern. - Jimmy Ka Ho Chiu; Yi-Ping Phoebe Chen (Bioinform., 2015)

Efficient Conversion of RNA Pseudoknots to Knot-Free Structures Using a Graphical Model. - Jimmy Ka Ho Chiu; Yi-Ping Phoebe Chen (IEEE Trans. Biomed. Eng., 2015)

A comprehensive study of RNA secondary structure alignment algorithms. - Jimmy Ka Ho Chiu; Yi-Ping Phoebe Chen (Briefings Bioinform., 2017)

ARGDIT: a validation and integration toolkit for Antimicrobial Resistance Gene Databases. - Jimmy Ka Ho Chiu; Rick Twee-Hee Ong (Bioinform., 2019)

Clustering biological sequences with dynamic sequence similarity threshold. - Jimmy Ka Ho Chiu; Rick Twee-Hee Ong (BMC Bioinform., 2022)