Estimating isoform abundance by Particle Swarm Optimization. - Jin Zhao 005; Haodi Feng (BIBM, 2016)

IsoTree: De Novo Transcriptome Assembly from RNA-Seq Reads - (Extended Abstract). - Jin Zhao 005; Haodi Feng; Daming Zhu; Chi Zhang 021; Ying Xu 001 (ISBRA, 2017)

DTAST: A Novel Radical Framework for de Novo Transcriptome Assembly Based on Suffix Trees. - Jin Zhao 005; Haodi Feng; Daming Zhu; Chi Zhang 021; Ying Xu 001 (ICIC (1), 2018)

DTA-SiST: de novo transcriptome assembly by using simplified suffix trees. - Jin Zhao 005; Haodi Feng; Daming Zhu; Chi Zhang 021; Ying Xu 001 (BMC Bioinform., 2019)

IsoTree: A New Framework for de novo Transcriptome Assembly from RNA-seq Reads. - Jin Zhao 005; Haodi Feng; Daming Zhu; Chi Zhang 021; Ying Xu 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2020)

Corrections to "IsoTree: A New Framework for de novo Transcriptome Assembly from RNA-seq Reads". - Jin Zhao 005; Haodi Feng; Daming Zhu; Chi Zhang 021; Ying Xu 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2020)

TransCoord: Genome-guided Transcripts Assembly by Coordinating Candidate Paths into Two-phased Linear Programming. - Chenchen Li; Jin Zhao 005; Haodi Feng; Daming Zhu (BIBM, 2021)

MultiTrans: An Algorithm for Path Extraction Through Mixed Integer Linear Programming for Transcriptome Assembly. - Jin Zhao 005; Haodi Feng; Daming Zhu; Yu Lin 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)