Low-cost mobile system for multispectral cultural heritage data acquisition. - Jan Blazek; Jindrich Soukup; Barbara Zitová; Jan Flusser; Tomás Tichý; Janka Hradilová (Digital Heritage (1), 2013)

Segmentation of Time-Lapse Images with Focus on Microscopic Images of Cells. - Jindrich Soukup; Petr Císar; Filip Sroubek (ICIAP (2), 2013)

M3art: A Database of Models of Canvas Paintings. - Jan Blazek; Jindrich Soukup; Barbara Zitová; Jan Flusser; Janka Hradilová; David Hradil; Tomás Tichý (EuroMed, 2014)

Segmentation of Individual Cells in Phase Contrast Microscopy Images. - Jindrich Soukup; Michal Lasan; Filip Sroubek (MIUA, 2014)

Variational Bayesian image reconstruction with an uncertainty model for measurement localization. - Filip Sroubek; Jindrich Soukup; Barbara Zitová (EUSIPCO, 2016)

Cell Segmentation Using Level Set Methods with a New Variance Term. - Zuzana Bílková; Jindrich Soukup; Václav Kucera (ICIAR, 2016)

AnNoBrainer, An Automated Annotation of Mouse Brain Images using Deep Learning. - Roman Peter; Petr Hrobar; Josef Navratil; Martin Vagenknecht; Jindrich Soukup; Keiko Tsuji; Nestor X. Barrezueta; Anna C. Stoll; Renee C. Gentzel; Jonathan A. Sugam; Jacob Marcus; Danny A. Bitton (Neuroinformatics, 2024)