Direct ab initio dynamics study on the rate constants and kinetic isotope effect for the reactions of H atoms with GeDn(CH3)4-n (n = 1-4). - Yang Wu; Yi-Hong Ding; Jing-Fa Xiao; Ze-Sheng Li; Xu-Ri Huang; Chia-Chung Sun (J. Comput. Chem., 2002)

DFT and Ab initio direct dynamics studies on the hydrogen abstraction reactions of chlorine atoms with CH4-nFn (n = 1-3). - Jing-Fa Xiao; Ze-Sheng Li; Jing-Yao Liu; Li Sheng; Chia-Chung Sun (J. Comput. Chem., 2002)

Homology modeling and molecular dynamics study of GSK3/SHAGGY-like kinase. - Jing-Fa Xiao; Ze-Sheng Li; Miao Sun; Yuan Zhang; Chia-Chung Sun (Comput. Biol. Chem., 2004)

Ab initio direct dynamics studies on the reaction of H atom with CH3CH2Cl. - Li Sheng; Ze-Sheng Li; Jing-Yao Liu; Jing-Fa Xiao; Chia-Chung Sun (J. Comput. Chem., 2004)

Theoretical study on the rate constants for the C2H5 + HBr C2H6 + Br reaction. - Li Sheng; Ze-Sheng Li; Jing-Yao Liu; Jing-Fa Xiao; Chia-Chung Sun (J. Comput. Chem., 2004)

A Scenario on the Stepwise Evolution of the Genetic Code. - Jing-Fa Xiao; Jun Yu 004 (Genom. Proteom. Bioinform., 2007)

Homology modeling and molecular dynamics simulation studies of human type 1 3beta-hydroxysteroid dehydrogenase: Toward the understanding of cofactor specificity. - Yongbing Zhao; Jing-Fa Xiao (J. Comput. Chem., 2011)

BAsplice: Bi-direction alignment for detecting splice junctions. - Jingde Bu; Jiayan Wu; Meili Chen; Jing-Fa Xiao; Jun Yu 004; Xuebin Chi; Zhong Jin (ISB, 2012)

PGAP: pan-genomes analysis pipeline. - Yongbing Zhao; Jiayan Wu; Junhui Yang; Shixiang Sun; Jing-Fa Xiao; Jun Yu 004 (Bioinform., 2012)

AuthorReward: increasing community curation in biological knowledge wikis through automated authorship quantification. - Lin Dai; Ming Tian; Jiayan Wu; Jing-Fa Xiao; Xumin Wang; Jeffrey P. Townsend; Zhang Zhang 002 (Bioinform., 2013)

PanGP: A tool for quickly analyzing bacterial pan-genome profile. - Yongbing Zhao; Xinmiao Jia; Junhui Yang; Yunchao Ling; Zhang Zhang 002; Jun Yu 004; Jiayan Wu; Jing-Fa Xiao (Bioinform., 2014)

Genome sequencing of high-penicillin producing industrial strain of Penicillium chrysogenum. - Fu-Qiang Wang; Jun Zhong; Ying Zhao; Jing-Fa Xiao; Jing Liu; Meng Dai; Guizhen Zheng; Li Zhang; Jun Yu 004; Jiayan Wu; Baoling Duan (BMC Genom., 2014)

Ribogenomics: the Science and Knowledge of RNA. - Jiayan Wu; Jing-Fa Xiao; Zhang Zhang 002; Xumin Wang; Songnian Hu; Jun Yu 004 (Genom. Proteom. Bioinform., 2014)

RiceWiki: a wiki-based database for community curation of rice genes. - Zhang Zhang 002; Jian Sang; Lina Ma; Gang Wu; Hao Wu; Dawei Huang; Dong Zou; Siqi Liu; Ang Li; Lili Hao; Ming Tian; Chao Xu; et al. (Nucleic Acids Res., 2014)

A Brief Review of Software Tools for Pangenomics. - Jing-Fa Xiao; Zhewen Zhang; Jiayan Wu; Jun Yu 004 (Genom. Proteom. Bioinform., 2015)

BS-RNA: An efficient mapping and annotation tool for RNA bisulfite sequencing data. - Fang Liang; Lili Hao; Jinyue Wang; Shuo Shi; Jing-Fa Xiao; Rujiao Li (Comput. Biol. Chem., 2016)

Precision Medicine: What Challenges Are We Facing? - Yu Xue 001; Eric-Wubbo Lameijer; Kai Ye 001; Kunlin Zhang; Suhua Chang; Xiaoyue Wang; Jianmin Wu; Ge Gao; Fangqing Zhao; Jian Li; Chunsheng Han; Shuhua Xu; et al. (Genom. Proteom. Bioinform., 2016)

MTD: a mammalian transcriptomic database to explore gene expression and regulation. - Xin Sheng; Jiayan Wu; Qianqian Sun; Xue Li; Feng Xian; Manman Sun; Wan Fang; Meili Chen; Jun Yu 004; Jing-Fa Xiao (Briefings Bioinform., 2017)

GSA: Genome Sequence Archive*. - Yanqing Wang; Fuhai Song; Junwei Zhu; Sisi Zhang; Yadong Yang; Tingting Chen; Bixia Tang; Lili Dong; Nan Ding 007; Qian Zhang 086; Zhouxian Bai; Xunong Dong; et al. (Genom. Proteom. Bioinform., 2017)

MethBank 3.0: a database of DNA methylomes across a variety of species. - Rujiao Li; Fang Liang; Mengwei Li; Dong Zou; Shixiang Sun; Yongbing Zhao; Wenming Zhao; Yiming Bao; Jing-Fa Xiao; Zhang Zhang 002 (Nucleic Acids Res., 2018)

ICG: a wiki-driven knowledgebase of internal control genes for RT-qPCR normalization. - Jian Sang; Zhennan Wang; Man Li; Jiabao Cao; Guangyi Niu; Lin Xia; Dong Zou; Fan Wang; Xingjian Xu; Xiaojiao Han; Jinqi Fan; Ye Yang; et al. (Nucleic Acids Res., 2018)

Genome Variation Map: a data repository of genome variations in BIG Data Center. - Shuhui Song; Dongmei Tian; Cuiping Li 004; Bixia Tang; Lili Dong; Jing-Fa Xiao; Yiming Bao; Wenming Zhao; Hang He; Zhang Zhang 002 (Nucleic Acids Res., 2018)

iDog: an integrated resource for domestic dogs and wild canids. - Bixia Tang; Qing Zhou; Lili Dong; Wulue Li; Xiangquan Zhang; Li Lan; Shuang Zhai; Jing-Fa Xiao; Zhang Zhang 002; Yiming Bao; Ya-Ping Zhang; Guo-Dong Wang; et al. (Nucleic Acids Res., 2019)

NucMap: a database of genome-wide nucleosome positioning map across species. - Yongbing Zhao; Jinyue Wang; Fang Liang; Yanxia Liu; Qi Wang 072; Hao Zhang; Meiye Jiang; Zhewen Zhang; Wenming Zhao; Yiming Bao; Zhang Zhang 002; Jiayan Wu; et al. (Nucleic Acids Res., 2019)

The Elements of Data Sharing. - Zhang Zhang 002; Shuhui Song; Jun Yu 004; Wenming Zhao; Jing-Fa Xiao; Yiming Bao (Genom. Proteom. Bioinform., 2020)

The Global Landscape of SARS-CoV-2 Genomes, Variants, and Haplotypes in 2019nCoVR. - Shuhui Song; Lina Ma; Dong Zou; Dongmei Tian; Cuiping Li 004; Junwei Zhu; Meili Chen; Anke Wang; Yingke Ma; Mengwei Li; Xufei Teng; Ying Cui; et al. (Genom. Proteom. Bioinform., 2020)

Compositional Variability and Mutation Spectra of Monophyletic SARS-CoV-2 Clades. - Xufei Teng; Qianpeng Li; Zhao Li 008; Yuansheng Zhang; Guangyi Niu; Jing-Fa Xiao; Jun Yu 004; Zhang Zhang 002; Shuhui Song (Genom. Proteom. Bioinform., 2020)

PADS Arsenal: a database of prokaryotic defense systems related genes. - Yadong Zhang; Zhewen Zhang; Hao Zhang; Yongbing Zhao; Zaichao Zhang; Jing-Fa Xiao (Nucleic Acids Res., 2020)

RefRGim: an intelligent reference panel reconstruction method for genotype imputation with convolutional neural networks. - Shuo Shi; Qiheng Qian; Shuhuan Yu; Qi Wang 072; Jinyue Wang; Jingyao Zeng; Zhenglin Du; Jing-Fa Xiao (Briefings Bioinform., 2021)

Applications and challenges of high performance computing in genomics. - Meiye Jiang; Congfan Bu; Jingyao Zeng; Zhenglin Du; Jing-Fa Xiao (CCF Trans. High Perform. Comput., 2021)

The Genome Sequence Archive Family: Toward Explosive Data Growth and Diverse Data Types. - Tingting Chen; Xu Chen 037; Sisi Zhang; Junwei Zhu; Bixia Tang; Anke Wang; Lili Dong; Zhewen Zhang; Caixia Yu; Yanling Sun; Lianjiang Chi; Huanxin Chen; et al. (Genom. Proteom. Bioinform., 2021)

Genome Warehouse: A Public Repository Housing Genome-scale Data. - Meili Chen; Yingke Ma; Song Wu; Xinchang Zheng; Hongen Kang; Jian Sang; Xingjian Xu; Lili Hao; Zhaohua Li; Zheng Gong; Jing-Fa Xiao; Zhang Zhang 002; et al. (Genom. Proteom. Bioinform., 2021)

LncExpDB: an expression database of human long non-coding RNAs. - Zhao Li 008; Lin Liu; Shuai Jiang; Qianpeng Li; Changrui Feng; Qiang Du; Dong Zou; Jing-Fa Xiao; Zhang Zhang 002; Lina Ma (Nucleic Acids Res., 2021)

Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2021. - Yongbiao Xue; Yiming Bao; Zhang Zhang 002; Wenming Zhao; Jing-Fa Xiao; Shunmin He; Guoqing Zhang 006; Yixue Li; Guoping Zhao; Runsheng Chen; Shuhui Song; Lina Ma; et al. (Nucleic Acids Res., 2021)

TSomVar: a tumor-only somatic and germline variant identification method with random forest. - Shuo Shi; Qi Wang 072; Yunfei Shang; Congfan Bu; Mingming Lu; Meiye Jiang; Hao Zhang; Shuhuan Yu; Jingyao Zeng; Zaichao Zhang; Zhenglin Du; Jing-Fa Xiao (Briefings Bioinform., 2022)

Biomedical application community based on China high-performance computing environment. - Lianhua He; Qian Liu; Baohua Zhang 003; Jingfa Xiao; Zhong Jin (CCF Trans. High Perform. Comput., 2022)

Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2022. - Yongbiao Xue; Yiming Bao; Zhang Zhang 002; Wenming Zhao; Jing-Fa Xiao; Shunmin He; Guoqing Zhang 006; Yixue Li; Guoping Zhao; Runsheng Chen; Jingyao Zeng; Yadong Zhang; et al. (Nucleic Acids Res., 2022)

CancerSCEM: a database of single-cell expression map across various human cancers. - Jingyao Zeng; Yadong Zhang; Yunfei Shang; Jialin Mai; Shuo Shi; Mingming Lu; Congfan Bu; Zhewen Zhang; Zaichao Zhang; Yang Li; Zhenglin Du; Jing-Fa Xiao (Nucleic Acids Res., 2022)

Gene Expression Nebulas (GEN): a comprehensive data portal integrating transcriptomic profiles across multiple species at both bulk and single-cell levels. - Yuansheng Zhang; Dong Zou; Tongtong Zhu; Tianyi Xu; Ming Chen; Guangyi Niu; Wenting Zong; Rong Pan; Wei Jing; Jian Sang; Chang Liu 082; Yujia Xiong; et al. (Nucleic Acids Res., 2022)

Database Commons: A Catalog of Worldwide Biological Databases. - Lina Ma; Dong Zou; Lin Liu; Huma Shireen; Amir Ali Abbasi; Alex Bateman; Jing-Fa Xiao; Wenming Zhao; Yiming Bao; Zhang Zhang 002 (Genom. Proteom. Bioinform., 2023)

T2T-YAO, T2T-SHUN, and More. - Jingfa Xiao; Jun Yu 004 (Genom. Proteom. Bioinform., 2023)

HGD: an integrated homologous gene database across multiple species. - Guangya Duan; Gangao Wu; Xiaoning Chen; Dongmei Tian; Zhaohua Li; Yanling Sun; Zhenglin Du; Lili Hao; Shuhui Song; Yuan Gao; Jing-Fa Xiao; Zhang Zhang 002; et al. (Nucleic Acids Res., 2023)

Cell Taxonomy: a curated repository of cell types with multifaceted characterization. - Shuai Jiang; Qiheng Qian; Tongtong Zhu; Wenting Zong; Yunfei Shang; Tong Jin 004; Yuansheng Zhang; Ming Chen; Zishan Wu; Yuan Chu; Rongqin Zhang; Sicheng Luo; et al. (Nucleic Acids Res., 2023)

LncBook 2.0: integrating human long non-coding RNAs with multi-omics annotations. - Zhao Li 008; Lin Liu; Changrui Feng; Yuxin Qin; Jing-Fa Xiao; Zhang Zhang 002; Lina Ma (Nucleic Acids Res., 2023)

TWAS Atlas: a curated knowledgebase of transcriptome-wide association studies. - Mingming Lu; Yadong Zhang; Fengchun Yang; Jialin Mai; Qianwen Gao; Xiaowei Xu; Hongyu Kang; Li Hou; Yunfei Shang; Qiheng Qain; Jie Liu; Meiye Jiang; et al. (Nucleic Acids Res., 2023)

ProPan: a comprehensive database for profiling prokaryotic pan-genome dynamics. - Yadong Zhang; Hao Zhang; Zaichao Zhang; Qiheng Qian; Zhewen Zhang; Jing-Fa Xiao (Nucleic Acids Res., 2023)

GenBase: A Nucleotide Sequence Database. - Congfan Bu; Xinchang Zheng; Xuetong Zhao; Tianyi Xu; Xue Bai; Yaokai Jia; Meili Chen; Lili Hao; Jing-Fa Xiao; Zhang Zhang 002; Wenming Zhao; Bixia Tang; et al. (Genom. Proteom. Bioinform., 2024)

The Updated Genome Warehouse: Enhancing Data Value, Security, and Usability to Address Data Expansion. - Yingke Ma; Xuetong Zhao; Yaokai Jia; Zhenxian Han; Caixia Yu; Zhuojing Fan; Zhang Zhang 002; Jingfa Xiao; Wenming Zhao; Yiming Bao; Meili Chen (Genom. Proteom. Bioinform., 2025)