TV-Based Multi-Label Image Segmentation with Label Cost Prior. - Jing Yuan 001; Yuri Boykov (BMVC, 2010)

A study on continuous max-flow and min-cut approaches. - Jing Yuan 001; Egil Bae; Xue-Cheng Tai (CVPR, 2010)

A Continuous Max-Flow Approach to Potts Model. - Jing Yuan 001; Egil Bae; Xue-Cheng Tai; Yuri Boykov (ECCV (6), 2010)

A Fast Continuous Max-Flow Approach to Non-convex Multi-labeling Problems. - Egil Bae; Jing Yuan 001; Xue-Cheng Tai; Yuri Boykov (Efficient Algorithms for Global Optimization Methods in Computer Vision, 2011)

A Convex Max-Flow Segmentation of LV Using Subject-Specific Distributions on Cardiac MRI. - Mohammad Saleh Nambakhsh; Jing Yuan 001; Ismail Ben Ayed; Kumaradevan Punithakumar; Aashish Goela; Ali Islam; Terry M. Peters; Shuo Li 001 (IPMI, 2011)

A Continuous Max-Flow Approach to Minimal Partitions with Label Cost Prior. - Jing Yuan 001; Egil Bae; Yuri Boykov; Xue-Cheng Tai (SSVM, 2011)

A Study on Convex Optimization Approaches to Image Fusion. - Jing Yuan 001; Juan Shi; Xue-Cheng Tai; Yuri Boykov (SSVM, 2011)

Global Minimization for Continuous Multiphase Partitioning Problems Using a Dual Approach. - Egil Bae; Jing Yuan 001; Xue-Cheng Tai (Int. J. Comput. Vis., 2011)

Convex relaxation for image segmentation by kernel mapping. - Mohamed Ben Salah; Ismail Ben Ayed; Jing Yuan 001; Zhijie Wang 003; Hong Zhang 013 (ICIP, 2012)

Fast interactive multi-region cardiac segmentation with linearly ordered labels. - Martin Rajchl; Jing Yuan 001; Eranga Ukwatta; Terry M. Peters (ISBI, 2012)

Rotational-Slice-Based Prostate Segmentation Using Level Set with Shape Constraint for 3D End-Firing TRUS Guided Biopsy. - Wu Qiu; Jing Yuan 001; Eranga Ukwatta; David Tessier; Aaron Fenster (MICCAI (1), 2012)

A Fast Convex Optimization Approach to Segmenting 3D Scar Tissue from Delayed-Enhancement Cardiac MR Images. - Martin Rajchl; Jing Yuan 001; James A. White; Cyrus M. S. Nambakhsh; Eranga Ukwatta; Feng Li; John Stirrat; Terry M. Peters (MICCAI (1), 2012)

A Convex Relaxation Approach to Fat/Water Separation with Minimum Label Description. - Abraam S. Soliman; Jing Yuan 001; James A. White; Terry M. Peters; Charles A. McKenzie (MICCAI (2), 2012)

Efficient Global Optimization Based 3D Carotid AB-LIB MRI Segmentation by Simultaneously Evolving Coupled Surfaces. - Eranga Ukwatta; Jing Yuan 001; Martin Rajchl; Aaron Fenster (MICCAI (3), 2012)

Real-time segmentation in 4D ultrasound with continuous max-flow. - Martin Rajchl; Jing Yuan 001; Terry M. Peters (Image Processing, 2012)

A Convex Max-Flow Approach to Distribution-Based Figure-Ground Separation. - Kumaradevan Punithakumar; Jing Yuan 001; Ismail Ben Ayed; Shuo Li 001; Yuri Boykov (SIAM J. Imaging Sci., 2012)

Simultaneous Convex Optimization of Regions and Region Parameters in Image Segmentation Models. - Egil Bae; Jing Yuan 001; Xue-Cheng Tai (Innovations for Shape Analysis, Models and Algorithms, 2013)

Efficient 3D Endfiring TRUS Prostate Segmentation with Globally Optimized Rotational Symmetry. - Jing Yuan 001; Wu Qiu; Martin Rajchl; Eranga Ukwatta; Xue-Cheng Tai; Aaron Fenster (CVPR, 2013)

Jointly Segmenting Prostate Zones in 3D MRIs by Globally Optimized Coupled Level-Sets. - Jing Yuan 001; Eranga Ukwatta; Wu Qiu; Martin Rajchl; Yue Sun; Xue-Cheng Tai; Aaron Fenster (EMMCVPR, 2013)

Efficient 3D Multi-region Prostate MRI Segmentation Using Dual Optimization. - Wu Qiu; Jing Yuan 001; Eranga Ukwatta; Yue Sun; Martin Rajchl; Aaron Fenster (IPMI, 2013)

Lateral Ventricle Segmentation of 3D Pre-term Neonates US Using Convex Optimization. - Wu Qiu; Jing Yuan 001; Jessica Kishimoto; Eranga Ukwatta; Aaron Fenster (MICCAI (3), 2013)

Fast Globally Optimal Segmentation of 3D Prostate MRI with Axial Symmetry Prior. - Wu Qiu; Jing Yuan 001; Eranga Ukwatta; Yue Sun; Martin Rajchl; Aaron Fenster (MICCAI (2), 2013)

Improving 2D-3D Registration Optimization Using Learned Prostate Motion Data. - Tharindu De Silva; Derek W. Cool; Jing Yuan 001; Cesare Romagnoli; Aaron Fenster; Aaron D. Ward (MICCAI (2), 2013)

Efficient Convex Optimization Approach to 3D Non-rigid MR-TRUS Registration. - Yue Sun; Jing Yuan 001; Martin Rajchl; Wu Qiu; Cesare Romagnoli; Aaron Fenster (MICCAI (1), 2013)

Joint Segmentation of 3D Femoral Lumen and Outer Wall Surfaces from MR Images. - Eranga Ukwatta; Jing Yuan 001; Wu Qiu; Martin Rajchl; Bernard Chiu; Shadi Shavakh; Jianrong Xu; Aaron Fenster (MICCAI (1), 2013)

Prostate segmentation in 3D TRUS using convex optimization with shape constraint. - Wu Qiu; Jing Yuan 001; Eranga Ukwatta; David Tessier; Aaron Fenster (Image Processing, 2013)

Efficient convex optimization-based curvature dependent contour evolution approach for medical image segmentation. - Eranga Ukwatta; Jing Yuan 001; Wu Qiu; Martin Rajchl; Aaron Fenster (Image Processing, 2013)

Left ventricle segmentation in MRI via convex relaxed distribution matching. - Cyrus M. S. Nambakhsh; Jing Yuan 001; Kumaradevan Punithakumar; Aashish Goela; Martin Rajchl; Terry M. Peters; Ismail Ben Ayed (Medical Image Anal., 2013)

3-D Carotid Multi-Region MRI Segmentation by Globally Optimal Evolution of Coupled Surfaces. - Eranga Ukwatta; Jing Yuan 001; Martin Rajchl; Wu Qiu; David Tessier; Aaron Fenster (IEEE Trans. Medical Imaging, 2013)

Maximizing Flows with Message-Passing: Computing Spatially Continuous Min-Cuts. - Egil Bae; Xue-Cheng Tai; Jing Yuan 001 (EMMCVPR, 2014)

Variational Time-Implicit Multiphase Level-Sets - A Fast Convex Optimization-Based Solution. - Martin Rajchl; John S. H. Baxter; Egil Bae; Xue-Cheng Tai; Aaron Fenster; Terry M. Peters; Jing Yuan 001 (EMMCVPR, 2014)

Semi-automatic segmentation of preterm neonate ventricle system from 3D ultrasound images. - Wu Qiu; Jing Yuan 001; Jessica Kishimoto; Sandrine de Ribaupierre; Eranga Ukwatta; Aaron Fenster (ISBI, 2014)

3D Prostate TRUS Segmentation Using Globally Optimized Volume-Preserving Prior. - Wu Qiu; Martin Rajchl; Fumin Guo; Yue Sun; Eranga Ukwatta; Aaron Fenster; Jing Yuan 001 (MICCAI (1), 2014)

Cerebral Ventricle Segmentation from 3D Pre-term IVH Neonate MR Images Using Atlas-Based Convex Optimization. - Wu Qiu; Jing Yuan 001; Martin Rajchl; Jessica Kishimoto; Eranga Ukwatta; Sandrine de Ribaupierre; Aaron Fenster (CARE@MICCAI, 2014)

Myocardial Infarct Segmentation and Reconstruction from 2D Late-Gadolinium Enhanced Magnetic Resonance Images. - Eranga Ukwatta; Jing Yuan 001; Wu Qiu; Katherine C. Wu; Natalia A. Trayanova; Fijoy Vadakkumpadan (MICCAI (2), 2014)

Smoothness parameter tuning for generalized hierarchical continuous max-flow segmentation. - John S. H. Baxter; Martin Rajchl; A. Jonathan McLeod; Ali R. Khan; Jing Yuan 001; Terry M. Peters (Image Processing, 2014)

A Continuous Max-Flow Approach to General Hierarchical Multi-Labelling Problems. - John S. H. Baxter; Martin Rajchl; Jing Yuan 001; Terry M. Peters (CoRR, 2014)

A Continuous Max-Flow Approach to Multi-Labeling Problems under Arbitrary Region Regularization. - John S. H. Baxter; Martin Rajchl; Jing Yuan 001; Terry M. Peters (CoRR, 2014)

RANCOR: Non-Linear Image Registration with Total Variation Regularization. - Martin Rajchl; John S. H. Baxter; Wu Qiu; Ali R. Khan; Aaron Fenster; Terry M. Peters; Jing Yuan 001 (CoRR, 2014)

Evaluation of prostate segmentation algorithms for MRI: The PROMISE12 challenge. - Geert Litjens 001; Robert Toth; Wendy J. M. van de Ven; Caroline Hoeks; Sjoerd Kerkstra; Bram van Ginneken; Graham Vincent; Gwenaël Guillard; Neil Birbeck; Jindang Zhang; Robin Strand; Filip Malmberg; et al. (Medical Image Anal., 2014)

Dual optimization based prostate zonal segmentation in 3D MR images. - Wu Qiu; Jing Yuan 001; Eranga Ukwatta; Yue Sun; Martin Rajchl; Aaron Fenster (Medical Image Anal., 2014)

A spatially continuous max-flow and min-cut framework for binary labeling problems. - Jing Yuan 001; Egil Bae; Xue-Cheng Tai; Yuri Boykov (Numerische Mathematik, 2014)

Convex-Relaxed Kernel Mapping for Image Segmentation. - Mohamed Ben Salah; Ismail Ben Ayed; Jing Yuan 001; Hong Zhang 013 (IEEE Trans. Image Process., 2014)

Prostate Segmentation: An Efficient Convex Optimization Approach With Axial Symmetry Using 3-D TRUS and MR Images. - Wu Qiu; Jing Yuan 001; Eranga Ukwatta; Yue Sun; Martin Rajchl; Aaron Fenster (IEEE Trans. Medical Imaging, 2014)

Interactive Hierarchical-Flow Segmentation of Scar Tissue From Late-Enhancement Cardiac MR Images. - Martin Rajchl; Jing Yuan 001; James A. White; Eranga Ukwatta; John Stirrat; Cyrus M. S. Nambakhsh; Feng P. Li; Terry M. Peters (IEEE Trans. Medical Imaging, 2014)

Automated pulmonary lobar ventilation measurements using volume-matched thoracic CT and MRI. - Fumin Guo; Sarah Svenningsen; Emma Bluemke; Martin Rajchl; Jing Yuan 001; Aaron Fenster; Grace Parraga (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2015)

Automatic 3D US Brain Ventricle Segmentation in Pre-Term Neonates Using Multi-phase Geodesic Level-Sets with Shape Prior. - Wu Qiu; Jing Yuan 001; Jessica Kishimoto; Yimin Chen; Martin Rajchl; Eranga Ukwatta; Sandrine de Ribaupierre; Aaron Fenster (MICCAI (3), 2015)

Longitudinal Analysis of Pre-term Neonatal Brain Ventricle in Ultrasound Images Based on Convex Optimization. - Wu Qiu; Jing Yuan 001; Jessica Kishimoto; Yimin Chen; Martin Rajchl; Eranga Ukwatta; Sandrine de Ribaupierre; Aaron Fenster (MICCAI (3), 2015)

3D MR ventricle segmentation in pre-term infants with post-hemorrhagic ventricle dilation. - Wu Qiu; Jing Yuan 001; Jessica Kishimoto; Yimin Chen; Sandrine de Ribaupierre; Bernard Chiu; Aaron Fenster (Image Processing, 2015)

A Proximal Bregman Projection Approach to Continuous Max-Flow Problems Using Entropic Distances. - John S. H. Baxter; Martin Rajchl; Jing Yuan 001; Terry M. Peters (CoRR, 2015)

Shape Complexes in Continuous Max-Flow Hierarchical Multi-Labeling Problems. - John S. H. Baxter; Jing Yuan 001; Terry M. Peters (CoRR, 2015)

Globally optimal co-segmentation of three-dimensional pulmonary 1H and hyperpolarized 3He MRI with spatial consistence prior. - Fumin Guo; Jing Yuan 001; Martin Rajchl; Sarah Svenningsen; Dante P. I. Capaldi; Khadija Sheikh; Aaron Fenster; Grace Parraga (Medical Image Anal., 2015)

Right ventricle segmentation from cardiac MRI: A collation study. - Caroline Petitjean; Maria A. Zuluaga; Wenjia Bai; Jean-Nicolas Dacher; Damien Grosgeorge; Jérôme Caudron; Su Ruan; Ismail Ben Ayed; Manuel Jorge Cardoso; Hsiang-Chou Chen; Daniel Jimenez-Carretero; María J. Ledesma-Carbayo; et al. (Medical Image Anal., 2015)

Joint segmentation of lumen and outer wall from femoral artery MR images: Towards 3D imaging measurements of peripheral arterial disease. - Eranga Ukwatta; Jing Yuan 001; Wu Qiu; Martin Rajchl; Bernard Chiu; Aaron Fenster (Medical Image Anal., 2015)

3D MR ventricle segmentation in pre-term infants with post-hemorrhagic ventricle dilatation (PHVD) using multi-phase geodesic level-sets. - Wu Qiu; Jing Yuan 001; Martin Rajchl; Jessica Kishimoto; Yimin Chen; Sandrine de Ribaupierre; Bernard Chiu; Aaron Fenster (NeuroImage, 2015)

Three-Dimensional Nonrigid MR-TRUS Registration Using Dual Optimization. - Yue Sun; Jing Yuan 001; Wu Qiu; Martin Rajchl; Cesare Romagnoli; Aaron Fenster (IEEE Trans. Medical Imaging, 2015)

Fast Deformable Image Registration with Non-smooth Dual Optimization. - Martin Rajchl; John S. H. Baxter; Wu Qiu; Ali R. Khan; Aaron Fenster; Terry M. Peters; Daniel Rueckert; Jing Yuan 001 (CVPR Workshops, 2016)

Shape complexes in continuous max-flow segmentation. - John S. H. Baxter; Jing Yuan 001; Maria Drangova; Terry M. Peters; Jiro Inoue (Image Processing, 2016)

Accurate quantification of local changes for carotid arteries in 3D ultrasound images using convex optimization-based deformable registration. - Jieyu Cheng; Wu Qiu; Jing Yuan 001; Aaron Fenster; Bernard Chiu (Image Processing, 2016)

3D prostate MR-TRUS non-rigid registration using dual optimization with volume-preserving constraint. - Wu Qiu; Jing Yuan 001; Aaron Fenster (Image Processing, 2016)

Hierarchical max-flow segmentation framework for multi-atlas segmentation with Kohonen self-organizing map based Gaussian mixture modeling. - Martin Rajchl; John S. H. Baxter; A. Jonathan McLeod; Jing Yuan 001; Wu Qiu; Terry M. Peters; Ali R. Khan (Medical Image Anal., 2016)

Myocardial Infarct Segmentation From Magnetic Resonance Images for Personalized Modeling of Cardiac Electrophysiology. - Eranga Ukwatta; Hermenegild Arevalo; Kristina Li; Jing Yuan 001; Wu Qiu; Peter Malamas; Katherine C. Wu; Natalia A. Trayanova; Fijoy Vadakkumpadan (IEEE Trans. Medical Imaging, 2016)

Simultaneous Segmentation of Multiple Regions in 3D Bladder MRI by Efficient Convex Optimization of Coupled Surfaces. - Xiaopan Xu; Xi Zhang 017; Yang Liu 093; Qiang Tian; Guopeng Zhang; Zengyue Yang; Hongbing Lu; Jing Yuan 001 (ICIG (2), 2017)

Bregman-Proximal Augmented Lagrangian Approach to Multiphase Image Segmentation. - Jing Yuan 001; Ke Yin; Yi-Guang Bai; Xiang-Chu Feng; Xue-Cheng Tai (SSVM, 2017)

HyperDense-Net: A hyper-densely connected CNN for multi-modal image semantic segmentation. - Jose Dolz; Ismail Ben Ayed; Jing Yuan 001; Christian Desrosiers (CoRR, 2017)

Directed Acyclic Graph Continuous Max-Flow Image Segmentation for Unconstrained Label Orderings. - John S. H. Baxter; Martin Rajchl; A. Jonathan McLeod; Jing Yuan 001; Terry M. Peters (Int. J. Comput. Vis., 2017)

Automatic segmentation approach to extracting neonatal cerebral ventricles from 3D ultrasound images. - Wu Qiu; Yimin Chen; Jessica Kishimoto; Sandrine de Ribaupierre; Bernard Chiu; Aaron Fenster; Jing Yuan 001 (Medical Image Anal., 2017)

Longitudinal Analysis of Pre-Term Neonatal Cerebral Ventricles From 3D Ultrasound Images Using Spatial-Temporal Deformable Registration. - Wu Qiu; Yimin Chen; Jessica Kishimoto; Sandrine de Ribaupierre; Bernard Chiu; Aaron Fenster; Bijoy K. Menon; Jing Yuan 001 (IEEE Trans. Medical Imaging, 2017)

Robust 2-D-3-D Registration Optimization for Motion Compensation During 3-D TRUS-Guided Biopsy Using Learned Prostate Motion Data. - Tharindu De Silva; Derek W. Cool; Jing Yuan 001; Cesare Romagnoli; Jagath Samarabandu; Aaron Fenster; Aaron D. Ward (IEEE Trans. Medical Imaging, 2017)

Isointense infant brain segmentation with a hyper-dense connected convolutional neural network. - Jose Dolz; Ismail Ben Ayed; Jing Yuan 001; Christian Desrosiers (ISBI, 2018)

Multi-region segmentation of bladder cancer structures in MRI with progressive dilated convolutional networks. - Jose Dolz; Xiaopan Xu; Jérôme Rony; Jing Yuan 001; Yang Liu 093; Eric Granger; Christian Desrosiers; Xi Zhang 017; Ismail Ben Ayed; Hongbing Lu (CoRR, 2018)

Modern Convex Optimization to Medical Image Analysis. - Jing Yuan 001; Aaron Fenster (CoRR, 2018)

Variational Community Partition with Novel Network Structure Centrality Prior. - Yi-Guang Bai; Sanyang Liu; Ke Yin; Jing Yuan 001 (CoRR, 2018)

Fixed-Point Deformable U-Net for Pancreas CT Segmentation. - Meixiang Huang; Chongfei Huang; Jing Yuan 001; Dexing Kong (ISICDM, 2019)

Bladder MR Image Segmentation by Convex Global Optimization of Coupled Borders. - Xiaopan Xu; Peng Du; Yang Liu 093; Xi Zhang 017; Jing Yuan 001; Hongbing Lu (ISICDM, 2019)

Log-barrier constrained CNNs. - Hoel Kervadec; Jose Dolz; Jing Yuan 001; Christian Desrosiers; Eric Granger; Ismail Ben Ayed (CoRR, 2019)

Clustering with Fairness Constraints: A Flexible and Scalable Approach. - Imtiaz Masud Ziko; Eric Granger; Jing Yuan 001; Ismail Ben Ayed (CoRR, 2019)

HyperDense-Net: A Hyper-Densely Connected CNN for Multi-Modal Image Segmentation. - Jose Dolz; Karthik Gopinath; Jing Yuan 001; Herve Lombaert; Christian Desrosiers; Ismail Ben Ayed (IEEE Trans. Medical Imaging, 2019)

Laplacian pyramid-based complex neural network learning for fast MR imaging. - Haoyun Liang; Yu Gong; Hoel Kervadec; Cheng Li 008; Jing Yuan 001; Xin Liu 053; Hairong Zheng; Shanshan Wang 002 (MIDL, 2020)

Deep CNN ensembles and suggestive annotations for infant brain MRI segmentation. - Jose Dolz; Christian Desrosiers; Li Wang 026; Jing Yuan 001; Dinggang Shen; Ismail Ben Ayed (Comput. Medical Imaging Graph., 2020)

Variational Fair Clustering. - Imtiaz Masud Ziko; Jing Yuan 001; Eric Granger; Ismail Ben Ayed (AAAI, 2021)

Iterative Reweighted Local Cross Correlation Method for Nonlinear Registration of Multiphase Liver CT Images. - Chongfei Huang; Chenhui Qiu; Zhiyi Peng; Jing Yuan 001; Dexing Kong (ICIP, 2021)

Efficient convex optimization-based texture mapping for large-scale 3D scene reconstruction. - Xin Sheng; Jing Yuan 001; Wenbing Tao; Bo Tao; Liman Liu (Inf. Sci., 2021)

Efficient and Convergent Preconditioned ADMM for the Potts Models. - Hongpeng Sun; Xue-Cheng Tai; Jing Yuan 001 (SIAM J. Sci. Comput., 2021)

Constrained deep networks: Lagrangian optimization via Log-barrier extensions. - Hoel Kervadec; Jose Dolz; Jing Yuan 001; Christian Desrosiers; Eric Granger; Ismail Ben Ayed (EUSIPCO, 2022)

GRU-TV: Time- and velocity-aware GRU for patient representation on multivariate clinical time-series data. - Ningtao Liu; Ruoxi Gao; Jing Yuan 001; Calire Park; Shuwei Xing; Shuiping Gou (CoRR, 2022)

Cost-Aware Deployment of Check-In Nodes in Complex Networks. - Yi-Guang Bai; Sanyang Liu; Qian Li; Jing Yuan 001 (IEEE Trans. Syst. Man Cybern. Syst., 2022)

Optimizing Delay Estimation in Breast RUCT Reconstruction Using Self-supervised Blind Segment Network. - Lei He; Zhaohui Liu; Qiude Zhang; Liang Zhou; Yuxin Cai; Jing Yuan 001; Mingyue Ding; Ming Yuchi; Wu Qiu (DEMI@MICCAI, 2024)

Densely connected convolutional networks for ultrasound image based lesion segmentation. - Jinlian Ma; Dexing Kong; Fa Wu; Lingyun Bao; Jing Yuan 001; Yusheng Liu (Comput. Biol. Medicine, 2024)

Efficient Convex Optimization for Non-convex Non-smooth Image Restoration. - Xinyi Li; Jing Yuan 001; Xue-Cheng Tai; Sanyang Liu (J. Sci. Comput., 2024)

Asymmetric-Backed Multi-Frequency Ultrasonic Transducer for Conformal Tumor Ablation. - Kang Chen; Dexing Kong; Jing Yuan 001; Yili Hu; Jianping Li 003; Jijie Ma; Jianming Wen (IEEE Trans. Biomed. Eng., 2024)

Deep convolutional neural networks meet variational shape compactness priors for image segmentation. - Kehui Zhang; Lingfeng Li; Hao Liu 028; Jing Yuan 001; Xue-Cheng Tai (Neurocomputing, 2025)

GRU-TV: Time- and Velocity-aware Gated Recurrent Unit for patient representation. - Ningtao Liu; Shuiping Gou; Ruoxi Gao; Binxiao Su; Wenbo Liu; Claire Keun Sun Park; Shuwei Xing; Jing Yuan 001; Aaron Fenster (J. Biomed. Informatics, 2025)

Untrained Neural Network-Based Full-Waveform Inversion for Breast Sound Speed Imaging in Ultrasound Computed Tomography. - Weicheng Yan; Qiude Zhang; Yun Wu; Zhaohui Liu; Hui Zhang; Zesong Wang; Jing Yuan 001; Mingyue Ding; Ming Yuchi; Wu Qiu (IEEE Trans. Instrum. Meas., 2025)

Recovering Fairness Directly from Modularity: a New Way for Fair Community Partitioning. - Yufeng Wang; Yiguang Bai; Tianqing Zhu; Ismail Ben Ayed; Jing Yuan 001 (CoRR, 2025)