MicroRNA identification based on sequence and structure alignment. - Xiaowo Wang; Jing Zhang 010; Fei Li; Jin Gu; Tao He; Xuegong Zhang; Yanda Li (Bioinform., 2005)

htSNPer1.0: software for haplotype block partition and htSNPs selection. - Keyue Ding; Jing Zhang 010; Kaixin Zhou; Yan Shen; Xuegong Zhang (BMC Bioinform., 2005)

Neighborhood preserving ordinal regression. - Yang Liu 007; Yan Liu 004; Keith C. C. Chan; Jing Zhang 010 (ICIMCS, 2012)

Inferring consistent functional interaction patterns from natural stimulus FMRI data. - Jiehuan Sun; Xintao Hu; Xiu Huang; Yang Liu 007; Kaiming Li; Xiang Li 001; Junwei Han 001; Lei Guo 002; Tianming Liu 001; Jing Zhang 010 (NeuroImage, 2012)

Detecting and understanding genetic and structural features in HIV-1 B subtype V3 underlying HIV-1 co-receptor usage. - Mengjie Chen; Valentina Svicher; Anna Artese; Giosuè Costa; Claudia Alteri; Francesco Ortuso; Lucia Parrotta; Yang Liu 007; Chang Liu; Carlo-Federico Perno; Stefano Alcaro; Jing Zhang 010 (Bioinform., 2013)

Generalized fMRI activation detection via Bayesian magnitude change point model. - Zhichao Lian; Jinglei Lv; Jianchuan Xing; Xiang Li 001; Xi Jiang 001; Dajiang Zhu; Jiansong Xu; Marc N. Potenza; Tianming Liu 001; Jing Zhang 010 (ISBI, 2014)

Exploring functional brain dynamics via a Bayesian connectivity change point model. - Zhichao Lian; Xiang Li 001; Jianchuan Xing; Jinglei Lv; Xi Jiang 001; Dajiang Zhu; Shu Zhang 001; Jiansong Xu; Marc N. Potenza; Tianming Liu 001; Jing Zhang 010 (ISBI, 2014)

Dynamic network partition via Bayesian connectivity bi-partition change point model. - Zhichao Lian; Xiang Li 001; Thomas Young; Yun Hao; Jianchuan Xing; Jinglei Lv; Xi Jiang 001; Dajiang Zhu; Tianming Liu 001; Jing Zhang 010 (ISBI, 2014)

Detecting cell assembly interaction patterns via Bayesian based change-point detection and graph inference model. - Zhichao Lian; Xiang Li 001; Hongmiao Zhang; Hui Kuang; Kun Xie 006; Jianchuan Xing; Dajiang Zhu; Joe Z. Tsien; Tianming Liu 001; Jing Zhang 010 (ISBI, 2014)

Dynamic Bayesian brain network partition and connectivity change point detection. - Zhichao Lian; Xiang Li 001; Yi Pan 001; Xuan Guo; Le Chen; Guantao Chen; Zhihui Wei; Tianming Liu 001; Jing Zhang 010 (ICCABS, 2015)

DAM: A Bayesian Method for Detecting Genome-wide Associations on Multiple Diseases. - Xuan Guo; Jing Zhang 010; Zhipeng Cai 001; Ding-Zhu Du; Yi Pan 001 (ISBRA, 2015)

Sparse representation of whole-brain fMRI signals for identification of functional networks. - Jinglei Lv; Xi Jiang 001; Xiang Li 001; Dajiang Zhu; Hanbo Chen; Tuo Zhang; Shu Zhang 001; Xintao Hu; Junwei Han 001; Heng Huang; Jing Zhang 010; Lei Guo 002; et al. (Medical Image Anal., 2015)

Bayesian Inference for Functional Dynamics Exploring in fMRI Data. - Xuan Guo; Bing Liu 017; Le Chen; Guantao Chen; Yi Pan 001; Jing Zhang 010 (Comput. Math. Methods Medicine, 2016)

Detecting Change Points in fMRI Data via Bayesian Inference and Genetic Algorithm Model. - Xiuchun Xiao; Bing Liu 017; Jing Zhang 010; Xueli Xiao; Yi Pan 001 (ISBRA, 2017)

Searching Genome-Wide Multi-Locus Associations for Multiple Diseases Based on Bayesian Inference. - Xuan Guo; Jing Zhang 010; Zhipeng Cai 001; Ding-Zhu Du; Yi Pan 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2017)

An Optimized Method for Bayesian Connectivity Change Point Model. - Xiuchun Xiao; Bing Liu 017; Jing Zhang 010; Xueli Xiao; Yi Pan 001 (J. Comput. Biol., 2018)

Probabilistic Methods in Computational Neuroscience. - Jing Zhang 010; Tianming Liu 001; Gopikrishna Deshpande (IEEE ACM Trans. Comput. Biol. Bioinform., 2018)

Unsupervised Conditional Consensus Adversarial Network for Brain Disease Identification with Structural MRI. - Jing Zhang 010; Mingxia Liu 001; Yongsheng Pan; Dinggang Shen (MLMI@MICCAI, 2019)

Bayesian analysis of complex mutations in HBV, HCV, and HIV studies. - Bing Liu 017; Shishi Feng; Xuan Guo; Jing Zhang 010 (Big Data Min. Anal., 2019)

CP-CLIP: Core-Periphery Feature Alignment CLIP for Zero-Shot Medical Image Analysis. - Xiaowei Yu; Zihao Wu 001; Lu Zhang 050; Jing Zhang 010; Yanjun Lyu; Dajiang Zhu (MICCAI (3), 2024)

Gyri vs. Sulci: Core-Periphery Organization in Functional Brain Networks. - Xiaowei Yu; Lu Zhang 050; Chao Cao; Tong Chen; Yanjun Lyu; Jing Zhang 010; Tianming Liu 001; Dajiang Zhu (MICCAI (12), 2024)

Brain Dialogue Interface (BDI): A User-Friendly fMRI Model for Interactive Brain Decoding. - Heng Huang; Lin Zhao 004; Zihao Wu 001; Xiaowei Yu; Jing Zhang 010; Xintao Hu; Dajiang Zhu; Tianming Liu 001 (CoRR, 2024)

GP-GPT: Large Language Model for Gene-Phenotype Mapping. - Yanjun Lyu; Zihao Wu 001; Lu Zhang 050; Jing Zhang 010; Yiwei Li 002; Wei Ruan; Zhengliang Liu; Xiaowei Yu; Chao Cao; Tong Chen; Minheng Chen; Yan Zhuang; et al. (CoRR, 2024)

Evaluation of OpenAI o1: Opportunities and Challenges of AGI. - Tianyang Zhong; Zhengliang Liu; Yi Pan 001; Yutong Zhang; Yifan Zhou; Shizhe Liang; Zihao Wu 001; Yanjun Lyu; Peng Shu; Xiaowei Yu; Chao Cao; Hanqi Jiang; et al. (CoRR, 2024)

Using Structural Similarity and Kolmogorov-Arnold Networks for Anatomical Embedding of 3-hinge Gyrus. - Minheng Chen; Chao Cao; Tong Chen; Yan Zhuang; Jing Zhang 010; Yanjun Lyu; Xiaowei Yu; Lu Zhang 050; Tianming Liu 001; Dajiang Zhu (CoRR, 2024)

Brain-Adapter: Enhancing Neurological Disorder Analysis with Adapter-Tuning Multimodal Large Language Models. - Jing Zhang 010; Xiaowei Yu; Yanjun Lyu; Lu Zhang 050; Tong Chen; Chao Cao; Yan Zhuang; Minheng Chen; Tianming Liu 001; Dajiang Zhu (ISBI, 2025)

Using Structural Similarity and Kolmogorov-Arnold Networks for Anatomical Embedding of Cortical Folding Patterns. - Minheng Chen; Chao Cao; Tong Chen; Yan Zhuang; Jing Zhang 010; Yanjun Lyu; Xiaowei Yu; Lu Zhang 050; Tianming Liu 001; Dajiang Zhu (ISBI, 2025)

Ca-vqvae: Cortical Folding Aware Numerical Representation of White-Matter Structure. - Yanjun Lyu; Jing Zhang 010; Lu Zhang 050; Tong Chen; Xiaowei Yu; Minheng Chen; Yan Zhuang; Chao Cao; Tianming Liu 001; Dajiang Zhu (ISBI, 2025)

Classiffication of Mild Cognitive Impairment Based on Dynamic Functional Connectivity using Spatio-Temporal Transformer. - Jing Zhang 010; Yanjun Lyu; Xiaowei Yu; Lu Zhang 050; Chao Cao; Tong Chen; Minheng Chen; Yan Zhuang; Tianming Liu 001; Dajiang Zhu (ISBI, 2025)

Large Language Models for Bioinformatics. - Wei Ruan; Yanjun Lyu; Jing Zhang 010; Jiazhang Cai; Peng Shu; Yang Ge; Yao Lu; Shang Gao; Yue Wang; Peilong Wang; Lin Zhao 004; Tao Wang; et al. (CoRR, 2025)

Classification of Mild Cognitive Impairment Based on Dynamic Functional Connectivity Using Spatio-Temporal Transformer. - Jing Zhang 010; Yanjun Lyu; Xiaowei Yu; Lu Zhang 050; Chao Cao; Tong Chen; Minheng Chen; Yan Zhuang; Tianming Liu 001; Dajiang Zhu (CoRR, 2025)

BrainNet-MoE: Brain-Inspired Mixture-of-Experts Learning for Neurological Disease Identification. - Jing Zhang 010; Xiaowei Yu; Tong Chen; Chao Cao; Mingheng Chen; Yan Zhuang; Yanjun Lyu; Lu Zhang 050; Li Su; Tianming Liu 001; Dajiang Zhu (CoRR, 2025)

Core-Periphery Principle Guided State Space Model for Functional Connectome Classification. - Minheng Chen; Xiaowei Yu; Jing Zhang 010; Tong Chen; Chao Cao; Yan Zhuang; Yanjun Lyu; Lu Zhang 050; Tianming Liu 001; Dajiang Zhu (CoRR, 2025)

GyralNet Subnetwork Partitioning via Differentiable Spectral Modularity Optimization. - Yan Zhuang; Minheng Chen; Chao Cao; Tong Chen; Jing Zhang 010; Xiaowei Yu; Yanjun Lyu; Lu Zhang 050; Tianming Liu 001; Dajiang Zhu (CoRR, 2025)

Knowledge Distillation and Dataset Distillation of Large Language Models: Emerging Trends, Challenges, and Future Directions. - Luyang Fang; Xiaowei Yu; Jiazhang Cai; Yongkai Chen; Shushan Wu; Zhengliang Liu; Zhenyuan Yang; Haoran Lu; Xilin Gong; Yufang Liu; Terry Ma; Wei Ruan; et al. (CoRR, 2025)

Domain-Adaptive Diagnosis of Lewy Body Disease with Transferability Aware Transformer. - Xiaowei Yu; Jing Zhang 010; Tong Chen; Yan Zhuang; Minheng Chen; Chao Cao; Yanjun Lyu; Lu Zhang 050; Li Su; Tianming Liu 001; Dajiang Zhu (CoRR, 2025)

Alignment and Safety in Large Language Models: Safety Mechanisms, Training Paradigms, and Emerging Challenges. - Haoran Lu; Luyang Fang; Ruidong Zhang; Xinliang Li; Jiazhang Cai; Huimin Cheng; Lin Tang; Ziyu Liu; Zeliang Sun; Tao Wang; Yingchuan Zhang; Arif Hassan Zidan; et al. (CoRR, 2025)

Bridging Brain Connectomes and Clinical Reports for Early Alzheimer's Disease Diagnosis. - Jing Zhang 010; Xiaowei Yu; Minheng Chen; Lu Zhang 050; Tong Chen; Yan Zhuang; Chao Cao; Yanjun Lyu; Li Su; Tianming Liu 001; Dajiang Zhu (CoRR, 2025)