OpenCL and the 13 dwarfs: a work in progress. - Wu-chun Feng; Heshan Lin; Thomas Scogland; Jing Zhang 039 (ICPE, 2012)

Optimizing Burrows-Wheeler Transform-Based Sequence Alignment on Multicore Architectures. - Jing Zhang 039; Heshan Lin; Pavan Balaji; Wu-chun Feng (CCGRID, 2013)

Consolidating Applications for Energy Efficiency in Heterogeneous Computing Systems. - Jing Zhang 039; Hao Wang 002; Heshan Lin; Wu-chun Feng (HPCC/EUC, 2013)

cuBLASTP: Fine-Grained Parallelization of Protein Sequence Search on a GPU. - Jing Zhang 039; Hao Wang 002; Heshan Lin; Wu-chun Feng (IPDPS, 2014)

Aeromancer: A Workflow Manager for Large-Scale MapReduce-Based Scientific Workflows. - Mohamed Nabeel; Nabanita Maji; Jing Zhang 039; Nataliya Timoshevskaya; Wu-chun Feng (TrustCom, 2014)

Rapid Screening of Transformed Data Leaks with Efficient Algorithms and Parallel Computing. - Xiaokui Shu; Jing Zhang 039; Danfeng Yao; Wu-chun Feng (CODASPY, 2015)

pDindel: Accelerating indel detection on a multicore CPU architecture with SIMD. - Da Zhang 004; Hao Wang 002; Kaixi Hou; Jing Zhang 039; Wu-chun Feng (ICCABS, 2015)

Rapid and parallel content screening for detecting transformed data exposure. - Xiaokui Shu; Jing Zhang 039; Danfeng Yao; Wu-chun Feng (INFOCOM Workshops, 2015)

muBLASTP: database-indexed protein sequence search on multicore CPUs. - Jing Zhang 039; Sanchit Misra; Hao Wang 002; Wu-chun Feng (BMC Bioinform., 2016)

Fast Detection of Transformed Data Leaks. - Xiaokui Shu; Jing Zhang 039; Danfeng (Daphne) Yao; Wu-chun Feng (IEEE Trans. Inf. Forensics Secur., 2016)

PaPar: A Parallel Data Partitioning Framework for Big Data Applications. - Hao Wang 002; Jing Zhang 039; Da Zhang 004; Sarunya Pumma; Wu-chun Feng (IPDPS, 2017)

Eliminating Irregularities of Protein Sequence Search on Multicore Architectures. - Jing Zhang 039; Sanchit Misra; Hao Wang 002; Wu-chun Feng (IPDPS, 2017)

cuBLASTP: Fine-Grained Parallelization of Protein Sequence Search on CPU+GPU. - Jing Zhang 039; Hao Wang 002; Wu-chun Feng (IEEE ACM Trans. Comput. Biol. Bioinform., 2017)

Taming irregular applications via advanced dynamic parallelism on GPUs. - Jing Zhang 039; Ashwin M. Aji; Michael L. Chu; Hao Wang 002; Wu-chun Feng (CF, 2018)

Transforming and Optimizing Irregular Applications for Parallel Architectures. - Jing Zhang 039 (2018)

A Feasibility Study for MPI over HDFS. - Wu-chun Feng; Da Zhang 004; Jing Zhang 039; Kaixi Hou; Sarunya Pumma; Hao Wang 002 (HPEC, 2020)