TSNAdb: A Database for Tumor-specific Neoantigens from Immunogenomics Data Analysis. - Jingcheng Wu; Wenyi Zhao; Binbin Zhou; Zhixi Su; Xun Gu 002; Zhan Zhou; Shuqing Chen (Genom. Proteom. Bioinform., 2018)

CanDriS: posterior profiling of cancer-driving sites based on two-component evolutionary model. - Wenyi Zhao; Jingwen Yang; Jingcheng Wu; Guoxing Cai; Yao Zhang; Jeffrey Haltom; Weijia Su; Michael J. Dong; Shuqing Chen; Jian Wu 001; Zhan Zhou; Xun Gu 002 (Briefings Bioinform., 2021)

Robustar: Interactive Toolbox Supporting Precise Data Annotation for Robust Vision Learning. - Chonghan Chen; Haohan Wang; Leyang Hu; Yuhao Zhang; Shuguang Lyu; Jingcheng Wu; Xinnuo Li; Linjing Sun; Eric P. Xing (CoRR, 2022)

MAGI-NET: Masked Global Information Network for Symbolic Music Generation. - Dawei Wang; Pengfei Li; Jingcheng Wu (iThings/GreenCom/CPSCom/SmartData/Cybermatics, 2023)

Exploring Link Prediction over Hyper-Relational Temporal Knowledge Graphs Enhanced with Time-Invariant Relational Knowledge. - Zifeng Ding; Jingcheng Wu; Jingpei Wu; Yan Xia 003; Volker Tresp (CoRR, 2023)

TSNAdb v2.0: The Updated Version of Tumor-specific Neoantigen Database. - Jingcheng Wu; Wenfan Chen; Yuxuan Zhou 004; Ying Chi; Xian-Sheng Hua 001; Jian Wu 001; Xun Gu 002; Shuqing Chen; Zhan Zhou (Genom. Proteom. Bioinform., 2023)

DeepTAP: An RNN-based method of TAP-binding peptide prediction in the selection of tumor neoantigens. - Xue Zhang; Jingcheng Wu; Joseph Baeza; Katie Gu; Yichun Zheng; Shuqing Chen; Zhan Zhou (Comput. Biol. Medicine, 2023)

DeepCIP: A multimodal deep learning method for the prediction of internal ribosome entry sites of circRNAs. - Yuxuan Zhou; Jingcheng Wu; Shihao Yao; Yulian Xu; Wenbin Zhao; Yunguang Tong; Zhan Zhou (Comput. Biol. Medicine, 2023)

Temporal Fact Reasoning over Hyper-Relational Knowledge Graphs. - Zifeng Ding; Jingcheng Wu; Jingpei Wu; Yan Xia 003; Bo Xiong; Volker Tresp (EMNLP (Findings), 2024)

Tackling the Data Heterogeneity in Asynchronous Federated Learning with Cached Update Calibration. - Yujia Wang; Yuanpu Cao; Jingcheng Wu; Ruoyu Chen; Jinghui Chen (ICLR, 2024)

SongCreator: Lyrics-based Universal Song Generation. - Shun Lei; Yixuan Zhou 002; Boshi Tang; Max W. Y. Lam; Feng Liu; Hangyu Liu; Jingcheng Wu; Shiyin Kang; Zhiyong Wu 001; Helen Meng (NeurIPS, 2024)

CovEpiAb: a comprehensive database and analysis resource for immune epitopes and antibodies of human coronaviruses. - Xue Zhang; Jingcheng Wu; Yuanyuan Luo; Yilin Wang; Yujie Wu; Xiaobin Xu; Yufang Zhang; Ruiying Kong; Ying Chi; Yisheng Sun; Shuqing Chen; Qiaojun He; et al. (Briefings Bioinform., 2024)

ChatMusician: Understanding and Generating Music Intrinsically with LLM. - Ruibin Yuan; Hanfeng Lin; Yi Wang 033; Zeyue Tian; Shangda Wu; Tianhao Shen; Ge Zhang 009; Yuhang Wu; Cong Liu; Ziya Zhou; Ziyang Ma 001; Liumeng Xue; et al. (CoRR, 2024)

DyGMamba: Efficiently Modeling Long-Term Temporal Dependency on Continuous-Time Dynamic Graphs with State Space Models. - Zifeng Ding; Yifeng Li; Yuan He 008; Antonio Norelli; Jingcheng Wu; Volker Tresp; Michael M. Bronstein; Yunpu Ma (Trans. Mach. Learn. Res., 2025)

Analyzable Chain-of-Musical-Thought Prompting for High-Fidelity Music Generation. - Max W. Y. Lam; Yijin Xing; Weiya You; Jingcheng Wu; Zongyu Yin; Fuqiang Jiang; Hangyu Liu; Feng Liu; Xingda Li; Wei-Tsung Lu; Hanyu Chen; Tong Feng; et al. (CoRR, 2025)