Identification of Transcriptional Regulatory Networks by Learning the Marginal Function of Outlier Sum Statistic. - Jinghua Gu; Jianhua Xuan; Yue Joseph Wang; Rebecca B. Riggins; Robert Clarke (ICMLA, 2010)

GIST: A Gibbs sampler to identify intracellular signal transduction pathways. - Jinghua Gu; Chen Wang 001; Ie-Ming Shih; Tian-Li Wang; Yue Wang 021; Robert Clarke; Jianhua Xuan (EMBC, 2011)

Detecting aberrant signal transduction pathways from high-throughput data using GIST algorithm. - Jinghua Gu; Jianhua Xuan; Chen Wang 001; Li Chen 018; Tian-Li Wang; Ie-Ming Shih (CIBCB, 2012)

Sampling-Based Subnetwork Identification from Microarray Data and Protein-Protein Interaction Network. - Xiao Wang 031; Jinghua Gu; Jianhua Xuan; Ayesha N. Shajahan; Robert Clarke; Li Chen 018 (ICMLA (2), 2012)

Integrative Network Analysis to Identify Aberrant Pathway Networks in Ovarian Cancer. - Li Chen 018; Jianhua Xuan; Jinghua Gu; Yue Wang 021; Zhen Zhang; Tian-Li Wang; Ie-Ming Shih (Pacific Symposium on Biocomputing, 2012)

Reconstructing transcriptional regulatory networks by probabilistic network component analysis. - Jinghua Gu; Jianhua Xuan; Xiao Wang 031; Ayesha N. Shajahan; Leena Hilakivi-Clarke; Robert Clarke (BCB, 2013)

mAPC-GibbsOS: an integrated approach for robust identification of gene regulatory networks. - Xu Shi; Jinghua Gu; Xi Chen 056; Ayesha N. Shajahan; Leena Hilakivi-Clarke; Robert Clarke; Jianhua Xuan (BMC Syst. Biol., 2013)

Novel Monte Carlo Approaches to Identify Aberrant Pathways in Cancer. - Jinghua Gu (2013)

A Markov random field-based Bayesian model to identify genes with differential methylation. - Xiao Wang 031; Jinghua Gu; Jianhua Xuan; Robert Clarke; Leena Hilakivi-Clarke (CIBCB, 2014)

Robust identification of transcriptional regulatory networks using a Gibbs sampler on outlier sum statistic. - Jinghua Gu; Jianhua Xuan; Rebecca B. Riggins; Li Chen 018; Yue Joseph Wang; Robert Clarke (Bioinform., 2014)

BADGE: A novel Bayesian model for accurate abundance quantification and differential analysis of RNA-Seq data. - Jinghua Gu; Xiao Wang 031; Leena Hilakivi-Clarke; Robert Clarke; Jianhua Xuan (BMC Bioinform., 2014)

Phantom: investigating heterogeneous gene sets in time-course data. - Jinghua Gu; Xuan Wang; Jinyan Chan; Nicole E. Baldwin; Jacob A. Turner (Bioinform., 2017)

DM-BLD: differential methylation detection using a hierarchical Bayesian model exploiting local dependency. - Xiao Wang 031; Jinghua Gu; Leena Hilakivi-Clarke; Robert Clarke; Jianhua Xuan (Bioinform., 2017)

CRNET: an efficient sampling approach to infer functional regulatory networks by integrating large-scale ChIP-seq and time-course RNA-seq data. - Xi Chen 056; Jinghua Gu; Xiao Wang 031; Jin-Gyoung Jung; Tian-Li Wang; Leena Hilakivi-Clarke; Robert Clarke; Jianhua Xuan (Bioinform., 2018)

Breaking the paradigm: Dr Insight empowers signature-free, enhanced drug repurposing. - Jinyan Chan; Xuan Wang; Jacob A. Turner; Nicole E. Baldwin; Jinghua Gu (Bioinform., 2019)