Combining Bayesian Networks and Decision Trees to Predict Drosophila melanogaster Protein-Protein Interactions. - Jingkai Yu; Farshad Fotouhi; Russell L. Finley Jr. (ICDE Workshops, 2005)

Computational Approaches for Predicting Protein-Protein Interactions: A Survey. - Jingkai Yu; Farshad Fotouhi (J. Medical Syst., 2006)

Combining multiple positive training sets to generate confidence scores for protein-protein interactions. - Jingkai Yu; Russell L. Finley Jr. (Bioinform., 2009)

A protein network-guided screen for cell cycle regulators in Drosophila. - Stephen Guest; Jingkai Yu; Dongmei Liu; Julie A. Hines; Maria A. Kashat; Russell L. Finley Jr. (BMC Syst. Biol., 2011)

DroID 2011: a comprehensive, integrated resource for protein, transcription factor, RNA and gene interactions for Drosophila. - Thilakam Murali; Svetlana Pacifico; Jingkai Yu; Stephen Guest; George G. Roberts III; Russell L. Finley Jr. (Nucleic Acids Res., 2011)

Mining breast cancer genes with a network based noise-tolerant approach. - Yaling Nie 002; Jingkai Yu (BMC Syst. Biol., 2013)

Fusing literature and full network data improves disease similarity computation. - Ping Li; Yaling Nie 002; Jingkai Yu (BMC Bioinform., 2016)