Sharing Ontology Schema Information for Web Service Integration. - Jingshan Huang; Rosa Laura Zavala Gutierrez; Benito Mendoza García; Michael N. Huhns (CIT, 2005)

OmniSeer: A Cognitive Framework for User Modeling, Reuse of Prior and Tacit Knowledge, and Collaborative Knowledge Services. - John Cheng; Ray Emami; Larry Kerschberg; Eugene Santos Jr.; Qunhua Zhao; Hien Nguyen 001; Hua Wang; Michael N. Huhns; Marco Valtorta; Jiangbo Dang; Hrishikesh J. Goradia; Jingshan Huang; et al. (HICSS, 2005)

Reconciling Agent Ontologies for Web Service Applications. - Jingshan Huang; Rosa Laura Zavala Gutierrez; Benito Mendoza García; Michael N. Huhns (MATES, 2005)

Ontology Reconciliation for Service-Oriented Computing. - Jingshan Huang; Jiangbo Dang; Michael N. Huhns (IEEE SCC, 2006)

Workflow coordination for service-oriented multiagent systems. - Jiangbo Dang; Jingshan Huang; Michael N. Huhns (AAMAS, 2007)

Ontology alignment as a basis for mobile service integration and invocation. - Jingshan Huang; Jiangbo Dang; Michael N. Huhns; Yongzhen Shao (Int. J. Pervasive Comput. Commun., 2007)

Ontology for MicroRNA Target prediction in human cancer. - Jingshan Huang; Ming Tan; Dejing Dou; Lei He 007; Christopher Townsend; Patrick J. Hayes (BCB, 2010)

Ontology-based knowledge acquisition for neuromotor functional recovery in stroke. - Christopher Townsend; Jingshan Huang; Dejing Dou; Haishan Liu; Lei He 007; Patrick J. Hayes; Robert Rudnick; Hardik Shah; Dennis Fell; Wei Liu 005 (BIBM Workshops, 2010)

NeuMORE: Ontology in stroke recovery. - Christopher Townsend; Jingshan Huang; Dejing Dou; Haishan Liu; Lei He 007; Patrick J. Hayes; Robert Rudnick; Hardik Shah; Dennis Fell; Wei Liu 005 (BIBM Workshops, 2010)

Ontology-based knowledge discovery and sharing in bioinformatics and medical informatics: A brief survey. - Jingshan Huang; Dejing Dou; Lei He 007; Patrick J. Hayes; Jiangbo Dang (FSKD, 2010)

OMIT: Domain Ontology and Knowledge Acquisition in MicroRNA Target Prediction - (Short Paper). - Christopher Townsend; Jingshan Huang; Dejing Dou; Shivraj Dalvi; Patrick J. Hayes; Lei He 007; Wen-Chang Lin; Haishan Liu; Robert Rudnick; Hardik Shah (OTM Conferences (2), 2010)

Knowledge Sharing and Reuse in Digital Forensics. - Jingshan Huang; Alec Yasinsac; Patrick J. Hayes (SADFE, 2010)

An ontology-based MicroRNA knowledge sharing and acquisition framework. - Jingshan Huang; Xingyu Lu; Dejing Dou; William T. Gerthoffer; Jiangbo Dang; Judith A. Blake; Ming Tan (BIBM Workshops, 2012)

Semi-automated microRNA ontology development based on artificial neural networks. - Jingshan Huang; Jiangbo Dang; Xingyu Lu; Min Xiong; William T. Gerthoffer; Ming Tan (BIBM, 2013)

Semantics-driven frequent data pattern mining on electronic health records for effective adverse drug event monitoring. - Jingshan Huang; Jun Huan; Alexander Tropsha; Jiangbo Dang; He Zhang; Min Xiong (BIBM, 2013)

Intrinsically resilient energy control systems. - Frederick T. Sheldon; Daniel Fetzer; David O. Manz; Jingshan Huang; Stuart Goose; Thomas H. Morris; Jiangbo Dang; Jonathan Kirsch; Dong Wei 009 (CSIIRW, 2013)

A domain ontology for the Non-Coding RNA field. - Jingshan Huang; Karen Eilbeck; Judith A. Blake; Dejing Dou; Darren A. Natale; Alan Ruttenberg; Barry Smith 001; Michael T. Zimmermann; Guoqian Jiang; Yu Lin; Bin Wu 008; Yongqun He; et al. (BIBM, 2015)

A semantic approach for knowledge capture of MIcroRNA-Target gene interactions. - Jingshan Huang; Fernando Gutierrez; Dejing Dou; Judith A. Blake; Karen Eilbeck; Darren A. Natale; Barry Smith 001; Yu Lin; Xiaowei Wang; Zixing Liu; Ming Tan; Alan Ruttenberg (BIBM, 2015)

A comprehensive (biological and computational) investigation on the role of microRNA: : mRNA regulations performed in chronic obstructive pulmonary disease and lung cancer. - Jingshan Huang; Dejing Dou; Jun She; Andrew H. Limper; Yanan Yang; Ping Yang (BIBM, 2016)

The utilization of the OmniSearch semantic search tool to explore various microRNA regulation mechanisms in osteoarthritis. - Jingshan Huang; Bi Liu; Yang Liu; Ji Chen (BIBM, 2016)

Innovative microRNA-lncRNA-mRNA co-expression analysis to understand the pathogenesis and progression of diabetic kidney disease. - Lihua Zhang; Rong Li; Qiuping Yang; Yanan Wu; Jingshan Huang; Bin Wu 008 (BIBM, 2016)

The Non-Coding RNA Ontology (NCRO): a comprehensive resource for the unification of non-coding RNA biology. - Jingshan Huang; Karen Eilbeck; Barry Smith 001; Judith A. Blake; Dejing Dou; Weili Huang; Darren A. Natale; Alan Ruttenberg; Jun Huan; Michael T. Zimmermann; Guoqian Jiang; Yu Lin; et al. (J. Biomed. Semant., 2016)

OmniSearch: a semantic search system based on the Ontology for MIcroRNA Target (OMIT) for microRNA-target gene interaction data. - Jingshan Huang; Fernando Gutierrez; Harrison J. Strachan; Dejing Dou; Weili Huang; Barry Smith 001; Judith A. Blake; Karen Eilbeck; Darren A. Natale; Yu Lin; Bin Wu 008; Nisansa de Silva; et al. (J. Biomed. Semant., 2016)

The development of non-coding RNA ontology. - Jingshan Huang; Karen Eilbeck; Barry Smith 001; Judith A. Blake; Dejing Dou; Weili Huang; Darren A. Natale; Alan Ruttenberg; Jun Huan; Michael T. Zimmermann; Guoqian Jiang; Yu Lin; et al. (Int. J. Data Min. Bioinform., 2016)

Discovering Inconsistencies in PubMed Abstracts through Ontology-Based Information Extraction. - Nisansa de Silva; Dejing Dou; Jingshan Huang (BCB, 2017)

MeSH term-based semantic analysis of microRNA regulation on glucocorticoid resistance in pediatric acute lymphoblastic leukemia. - Huiqin Chen 002; Dihua Zhang; Guoping Zhang; Xiaofeng Li; Ying Liang; Mohan Vamsi Kasukurthi; Glen M. Borchert; Jingshan Huang (BIBM, 2017)

Computational analysis to discover microRNA biomarkers in glioblastoma. - Huawei Jin; Zhenhua Yu; Xiaodan Wang; Weian Chen; Shaolei Guo; Mohan Vamsi Kasukurthi; Glen M. Borchert; Jingshan Huang (BIBM, 2017)

Combine biological experiments, statistical analysis, and semantic search to discover association among high-sensitive C-reactive protein, body fat mass distribution, and other cardiometabolic risk factors in young healthy women. - Bin Wu 008; Jingshan Huang; Mohan Vamsi Kasukurthi; Fangwan Huang; Jiang Bian; Keisuke Fukuo; Kazuhisa Suzuki; Gen Yoshino; Tsutomu Kazumi (BIBM, 2017)

Semantics-oriented data science and computational life sciences: Innovative application of semantic technologies in microRNA and lncRNA research. - Jingshan Huang; Dejing Dou; Ming Tan; Glen M. Borchert; Karen Eilbeck; Alan Ruttenberg; Ping Yang (ICCABS, 2017)

Body Composition and Biochemical Characteristics of Normal Weight Obesity in Japanese Young Women with Different Physical Activities. - Jingshan Huang; Keisuke Fukuo; Gen Yoshino; Tsutomu Kazumi; Chandan Basetty; Yulong Huang; Shaobo Tan; Dongqi Li; Ada Chaeli van der Zijp-Tan; Ada Fong; Glen M. Borchert; Bin Wu 008 (BIBM, 2018)

A PWM-Based Muscle Fatigue Detection and Recovery System. - Bin Ma 003; Chunxiao Li 005; Zhaolong Wu; Yulong Huang; Ada Chaeli van der Zijp-Tan; Shaobo Tan; Dongqi Li; Ada Fong; Chandan Basetty; Glen M. Borchert; Jingshan Huang (BIBM, 2018)

Novel Method for Singleton and Cyclic Attractor Observability in Boolean Networks. - Yushan Qiu; Yulong Huang; Shaobo Tan; Dongqi Li; Ada Chaeli van der Zijp-Tan; Ada Fong; Glen M. Borchert; Jingshan Huang (BIBM, 2018)

Mapping Common Data Elements to a Domain Model Using an Artificial Neural Network. - Robinette Renner; Shengyu Li; Yulong Huang; Shaobo Tan; Dongqi Li; Ada Chaeli van der Zijp-Tan; Ryan Benton; Glen M. Borchert; Jingshan Huang; Guoqian Jiang (BIBM, 2018)

A semantics-oriented computational approach to investigate microRNA regulation on glucocorticoid resistance in pediatric acute lymphoblastic leukemia. - Huiqin Chen 002; Dihua Zhang; Guoping Zhang; Xiaofeng Li; Ying Liang; Mohan Vamsi Kasukurthi; Shengyu Li; Glen M. Borchert; Jingshan Huang (BMC Medical Informatics Decis. Mak., 2018)

Introduction: selected extended articles from the 2nd International Workshop on Semantics-Powered Data Analytics (SEPDA 2017). - Zhe He 001; Cui Tao; Jiang Bian 001; Rui Zhang 028; Jingshan Huang (BMC Medical Informatics Decis. Mak., 2018)

Guest Editorial for Special Section on BIBM 2015. - Tianhai Tian; Jingshan Huang (IEEE ACM Trans. Comput. Biol. Bioinform., 2018)

Sleep Disorder Classification Method based on Logistic Regression with Apnea-ECG Dataset. - Liangming Cai; Chunqiang Chen; Xiaoling Wang; Xiong Yang; Shurui Lin; Jiefeng Huang; Jinping Jiang; Rituparna Datta; Min Du 001; Haiyan Jiang; Minchen Zhu; Jingshan Huang (AIAM (ACM), 2019)

Sleep Disorder Data Stream Classification Based on Classifiers Ensemble and Active Learning. - Liangming Cai; Rituparna Datta; Jingshan Huang; Shuai Dong; Min Du 001 (BIBM, 2019)

FGF21 mediates corticosteroid-related bone mass loss through PPAR-$ gamma$. - Yaxin Guan; Jingwei Lin; Glen M. Borchert; Bin Wu 008; Jingshan Huang; Shengting Huang; Mohan Vamsi Kasukurthi; Yulong Huang; Dongqi Li; Shaobo Tan; Sida Wang; Xin Nian (BIBM, 2019)

SURFr: Algorithm for identification and analysis of ncRNA-derived RNAs. - Mohan Vamsi Kasukurthi; Shengyu Li; Glen M. Borchert; Jingshan Huang; Dihua Zhang; Mika Housevera; Yulong Huang; Shaobo Tan; Bin Ma 003; Dongqi Li; Ryan Benton; Jingwei Lin (BIBM, 2019)

Reversible Data Hiding Based Key Region Protection Method in Medical Images. - Jian Li 034; Shaobo Tan; Bin Ma 003; Meihong Yang; Jingshan Huang; Zelin Zhang; Shengyu Li; Ryan Benton; Yulong Huang; Mohan Vamsi Kasukurthi; Dongqi Li; Jingwei Lin; et al. (BIBM, 2019)

A SVM-Based Algorithm to Diagnose Sleep Apnea. - Bin Ma 003; Shaobo Tan; Meihong Yang; Jingshan Huang; Zhaolong Wu; Shengyu Li; Ryan Benton; Dongqi Li; Yulong Huang; Mohan Vamsi Kasukurthi; Jingwei Lin; Glen M. Borchert (BIBM, 2019)

Use CPET data to predict the intervention effect of aerobic exercise on young hypertensive patients. - Guanyi Yang; Ryan Benton; Glen M. Borchert; Bin Ma 003; Jingshan Huang; Xiuyu Leng; Fangwan Huang; Mohan Vamsi Kasukurthi; Yulong Huang; Dongqi Li; Jingwei Lin; Shaobo Tan; et al. (BIBM, 2019)

An Open Source Map Optimization Platform for Efficient Navigation. - Liangming Cai; Rituparna Datta; Yurong Li; Jingshan Huang; Chunqiang Chen; Xiaoling Wang; Shurui Lin; Kai Cheng; Jiefeng Huang; Jinping Jiang; Minchen Zhu; Min Du 001 (CSE/EUC, 2019)

ECG Arrhythmia Classification Using STFT-Based Spectrogram and Convolutional Neural Network. - Jingshan Huang; Binqiang Chen; Bin Yao; Wangpeng He (IEEE Access, 2019)

Exploring Observability of Attractor Cycles in Boolean Networks for Biomarker Detection. - Yushan Qiu; Yulong Huang; Shaobo Tan; Dongqi Li; Ada Chaeli van der Zijp-Tan; Glen M. Borchert; Hao Jiang 009; Jingshan Huang (IEEE Access, 2019)

Muscle fatigue detection and treatment system driven by internet of things. - Bin Ma 003; Chunxiao Li 005; Zhaolong Wu; Yulong Huang; Ada Chaeli van der Zijp-Tan; Shaobo Tan; Dongqi Li; Ada Fong; Chandan Basetty; Glen M. Borchert; Ryan Benton; Bin Wu 008; et al. (BMC Medical Informatics Decis. Mak., 2019)

Using an artificial neural network to map cancer common data elements to the biomedical research integrated domain group model in a semi-automated manner. - Robinette Renner; Shengyu Li; Yulong Huang; Ada Chaeli van der Zijp-Tan; Shaobo Tan; Dongqi Li; Mohan Vamsi Kasukurthi; Ryan Benton; Glen M. Borchert; Jingshan Huang; Guoqian Jiang (BMC Medical Informatics Decis. Mak., 2019)

A partial encryption algorithm for medical images based on quick response code and reversible data hiding technology. - Jian Li 034; Zelin Zhang; Shengyu Li; Ryan Benton; Yulong Huang; Mohan Vamsi Kasukurthi; Dongqi Li; Jingwei Lin; Glen M. Borchert; Shaobo Tan; Gang Li; Bin Ma 003; et al. (BMC Medical Informatics Decis. Mak., 2020)

Development of a support vector machine learning and smart phone Internet of Things-based architecture for real-time sleep apnea diagnosis. - Bin Ma 003; Zhaolong Wu; Shengyu Li; Ryan Benton; Dongqi Li; Yulong Huang; Mohan Vamsi Kasukurthi; Jingwei Lin; Glen M. Borchert; Shaobo Tan; Gang Li; Meihong Yang; et al. (BMC Medical Informatics Decis. Mak., 2020)

SURFR: A Real-Time Platform for Non-Coding RNA Fragmentation Analysis Using Wavelets. - Mohan Vamsi Kasukurthi; Dominika Houserova; Yulong Huang; Shengyu Li; Dongqi Li; Jingwei Lin; Guanhuan Yang; Shaobo Tan; David Bourrie; Bin Ma 003; Glen M. Borchert; Jingshan Huang (BIBM, 2021)

A New Classification Algorithm and a New Oversampling Method of Mapping Common Data Elements to the BRIDG Model. - Shengyu Li; Yulong Huang; Mohan Vamsi Kasukurthi; Jiajie Yang; Dongqi Li; Guanhuan Yang; Jingwei Lin; Shaobo Tan; David Bourrie; Bin Ma 003; Glen M. Borchert; Jingshan Huang (BIBM, 2021)

Semi-supervised meibomian gland segmentation via mutual consistency constraints and uncertainty rectification. - Jiawen Lin; Feng Lu; Li Li; Lingjie Lin; Dongqi Li; Glen M. Borchert; Jingshan Huang (BIBM, 2023)

Evaluating the Use of Large Language Model to Identify Top Research Priorities in Hematology. - Huiqin Chen 002; Fangwan Huang; Xuanyun Liu; Yinli Tan; Dihua Zhang; Dongqi Li; Glen M. Borchert; Ming Tan; Jingshan Huang (HealthCom, 2023)

Differential Expression of Adipocyte Transcripts in SAT and VAT between Normal Weight and Obese/Overweight Individuals. - Chuanmin Bai; Rong Huang; Juan Zhao; Glen M. Borchert; Jingshan Huang; Bin Wu 008 (BIBM, 2024)

Artificial intelligence assisted recognition and diagnosis of Magnetically controlled capsule gastroscopy. - Susu Chen; Chuyu Wei; Dongqi Li; Glen M. Borchert; Zhong Yu; Jiawen Lin; Jingshan Huang (BIBM, 2024)

Relationship of body adipose tissue distribution with vitamin D and bone metabolism indices in patients with type 2 diabetes mellitus. - Juan Zhao; Yaxin Guan; Fan Zuo; Xin Nian; Dongqi Li; Glen M. Borchert; Jingshan Huang; Bin Wu (BIBM, 2024)