Least square conformal mapping with spring energy. - Jingxin Nie; Tianming Liu 001; Geoffrey S. Young; Lei Guo 002; Stephen T. C. Wong (ISBI, 2006)

Segmentation of Touching Cells Using Gradient Flow Tracking. - Gang Li 001; Tianming Liu 001; Jingxin Nie; Lei Guo 002; Stephen T. C. Wong (ISBI, 2007)

Reconstruction of Central Cortical Surface from Brain Mri Images: Method and Application. - Jingxin Nie; Tianming Liu 001; Lei Guo 002; Stephen T. C. Wong (ISBI, 2007)

Least-square conformal brain mapping with spring energy. - Jingxin Nie; Tianming Liu 001; Gang Li 001; Geoffrey S. Young; Ashley Tarokh; Lei Guo 002; Stephen T. C. Wong (Comput. Medical Imaging Graph., 2007)

A Novel Method for Cortical Sulcal Fundi Extraction. - Gang Li 001; Tianming Liu 001; Jingxin Nie; Lei Guo 002; Stephen T. C. Wong (MICCAI (1), 2008)

ZFIQ: a software package for zebrafish biology. - Tianming Liu 001; Jingxin Nie; Gang Li 001; Lei Guo 002; Stephen T. C. Wong (Bioinform., 2008)

Reconstruction of central cortical surface from brain MRI images: Method and application. - Tianming Liu 001; Jingxin Nie; Ashley Tarokh; Lei Guo 002; Stephen T. C. Wong (NeuroImage, 2008)

An Automated Method for Cell Detection in Zebrafish. - Tianming Liu 001; Gang Li 001; Jingxin Nie; Ashley Tarokh; Xiaobo Zhou 001; Lei Guo 002; Jarema Malicki; Weiming Xia; Stephen T. C. Wong (Neuroinformatics, 2008)

Gyral Folding Pattern Analysis via Surface Profiling. - Kaiming Li; Lei Guo 002; Gang Li 001; Jingxin Nie; Carlos Faraco; Qun Zhao; L. Stephen Miller; Tianming Liu 001 (MICCAI (1), 2009)

A Computational Model of Cerebral Cortex Folding. - Jingxin Nie; Gang Li 001; Lei Guo 002; Tianming Liu 001 (MICCAI (1), 2009)

Parametric Representation of Cortical Surface Folding Based on Polynomials. - Tuo Zhang; Lei Guo 002; Gang Li 001; Jingxin Nie; Tianming Liu 001 (MICCAI (1), 2009)

Review of methods for functional brain connectivity detection using fMRI. - Kaiming Li; Lei Guo 002; Jingxin Nie; Gang Li 001; Tianming Liu 001 (Comput. Medical Imaging Graph., 2009)

Automated brain tumor segmentation using spatial accuracy-weighted hidden Markov Random Field. - Jingxin Nie; Zhong Xue; Tianming Liu 001; Geoffrey S. Young; Kian Setayesh; Lei Guo 002; Stephen T. C. Wong (Comput. Medical Imaging Graph., 2009)

Automatic cortical sulcal parcellation based on surface principal direction flow field tracking. - Gang Li 001; Lei Guo 002; Jingxin Nie; Tianming Liu 001 (NeuroImage, 2009)

Direction field diffusion on cortical surface via graph cuts. - Gang Li 001; Lei Guo 002; Jingxin Nie; Kaiming Li; Tianming Liu 001 (CVPR Workshops, 2010)

Joint analysis of fiber shape and cortical folding patterns. - Xintao Hu; Lei Guo 002; Tuo Zhang; Gang Li 001; Jingxin Nie; Xi Jiang 001; Degang Zhang; Tianming Liu 001 (ISBI, 2010)

Cortical surface based identification of brain networks using high spatial resolution resting state FMRI data. - Kaiming Li; Lei Guo 002; Gang Li 001; Jingxin Nie; Carlos Faraco; Qun Zhao; L. Stephen Miller; Tianming Liu 001 (ISBI, 2010)

Automatic cortical surface parcellation based on fiber density information. - Degang Zhang; Lei Guo 002; Gang Li 001; Jingxin Nie; Fan Deng 001; Kaiming Li; Xintao Hu; Tuo Zhang; Xi Jiang 001; Dajiang Zhu; Qun Zhao; Tianming Liu 001 (ISBI, 2010)

Cortical Sulcal Bank Segmentation via Geometric Similarity Based Graph Partition. - Gang Li 001; Lei Guo 002; Tuo Zhang; Jingxin Nie; Tianming Liu 001 (MIAR, 2010)

Automatic Cortical Gyral Parcellation Using Probabilistic Atlas and Graph Cuts. - Gang Li 001; Lei Guo 002; Tuo Zhang; Jingxin Nie; Tianming Liu 001 (MIAR, 2010)

Predictive modeling of neuroanatomic structures for brain atrophy detection. - Xintao Hu; Lei Guo 002; Jingxin Nie; Kaiming Li; Tianming Liu 001 (Computer-Aided Diagnosis, 2010)

A Dynamic Skull Model for Simulation of Cerebral Cortex Folding. - Hanbo Chen; Lei Guo 002; Jingxin Nie; Tuo Zhang; Xintao Hu; Tianming Liu 001 (MICCAI (2), 2010)

Gyral parcellation of cortical surfaces via coupled flow field tracking. - Gang Li 001; Lei Guo 002; Kaiming Li; Jingxin Nie; Tianming Liu 001 (Image Processing, 2010)

An automated pipeline for cortical sulcal fundi extraction. - Gang Li 001; Lei Guo 002; Jingxin Nie; Tianming Liu 001 (Medical Image Anal., 2010)

Gyral folding pattern analysis via surface profiling. - Kaiming Li; Lei Guo 002; Gang Li 001; Jingxin Nie; Carlos Faraco; Guangbin Cui; Qun Zhao; L. Stephen Miller; Tianming Liu 001 (NeuroImage, 2010)

Consistent Reconstruction of Cortical Surfaces from Longitudinal Brain MR Images. - Gang Li 001; Jingxin Nie; Dinggang Shen (MICCAI (2), 2011)

Robust Deformable-Surface-Based Skull-Stripping for Large-Scale Studies. - Yaping Wang; Jingxin Nie; Pew-Thian Yap; Feng Shi 001; Lei Guo 002; Dinggang Shen (MICCAI (3), 2011)

Partition Cortical Surfaces into Supervertices: Method and Application. - Gang Li 001; Jingxin Nie; Dinggang Shen (MeshMed, 2012)

Consistent reconstruction of cortical surfaces from longitudinal brain MR images. - Gang Li 001; Jingxin Nie; Guorong Wu 001; Yaping Wang; Dinggang Shen (NeuroImage, 2012)

Measuring longitudinally dynamic cortex development in infants by reconstruction of consistent cortical surfaces. - Gang Li 001; Jingxin Nie; Li Wang 026; Feng Shi 001; John H. Gilmore; Weili Lin; Dinggang Shen (ISBI, 2013)

Mapping longitudinal cerebral cortex development using diffusion tensor imaging. - Yaping Wang; Gang Li 001; Mihye Ahn; Jingxin Nie; Hongtu Zhu; Lei Guo 002 (Image Processing, 2013)

Consistent 4D brain extraction of serial brain MR images. - Yaping Wang; Gang Li 001; Jingxin Nie; Pew-Thian Yap; Lei Guo 002; Dinggang Shen (Image Processing, 2013)

Development of cortical anatomical properties from early childhood to early adulthood. - Jingxin Nie; Gang Li 001; Dinggang Shen (NeuroImage, 2013)

Automated Segmentation of Mouse Brain Images Using Multi-Atlas Multi-ROI Deformation and Label Fusion. - Jingxin Nie; Dinggang Shen (Neuroinformatics, 2013)

Measuring the dynamic longitudinal cortex development in infants by reconstruction of temporally consistent cortical surfaces. - Gang Li 001; Jingxin Nie; Li Wang 026; Feng Shi 001; John H. Gilmore; Weili Lin; Dinggang Shen (NeuroImage, 2014)

Abnormal Brain Activity in ADHD: A Study of Resting-State fMRI. - Chao Tang; Yuqing Wei; Jiajia Zhao; Xin Zhang 013; Jingxin Nie (BI, 2017)

The Dynamic Measurements of Regional Brain Activity for Resting-State fMRI: d-ALFF, d-fALFF and d-ReHo. - Chao Tang; Yuqing Wei; Jiajia Zhao; Jingxin Nie (MICCAI (3), 2018)

Spatiotemporal Analysis of Developing Brain Networks. - Ping He 001; Xiaohua Xu 001; Han Zhang 002; Gang Li 001; Jingxin Nie; Pew-Thian Yap; Dinggang Shen (Frontiers Neuroinformatics, 2018)

Movie-Watching fMRI Reveals Inter-subject Synchrony Alteration in Functional Brain Activity in ADHD. - Chao Tang; Ziyi Huang; Senyu Zhou; Qi Wang; Fa Yi; Jingxin Nie (GLMI@MICCAI, 2019)

Functional Parcellation of Individual Cerebral Cortex Based on Functional MRI. - Jiajia Zhao; Chao Tang; Jingxin Nie (Neuroinformatics, 2020)

Movie Events Detecting Reveals Inter-Subject Synchrony Difference of Functional Brain Activity in Autism Spectrum Disorder. - Wenfei Ou; Wenxiu Zeng; Wenjian Gao; Juan He; Yufei Meng; Xiaowen Fang; Jingxin Nie (Frontiers Comput. Neurosci., 2022)

Brain Connectivity Based Graph Convolutional Networks and Its Application to Infant Age Prediction. - Yu Li 043; Xin Zhang 013; Jingxin Nie; Guowei Zhang; Ruiyan Fang; Xiangmin Xu; Zhengwang Wu; Dan Hu; Li Wang 026; Han Zhang 002; Weili Lin; Gang Li 001 (IEEE Trans. Medical Imaging, 2022)

Talking to the brain: Using Large Language Models as Proxies to Model Brain Semantic Representation. - Xin Liu; Ziyue Zhang; Jingxin Nie (CoRR, 2025)

Psychological Counseling Ability of Large Language Models. - Fangyu Peng; Jingxin Nie (CoRR, 2025)

From Eye to Mind: brain2text Decoding Reveals the Neural Mechanisms of Visual Semantic Processing. - Feihan Feng; Jingxin Nie (CoRR, 2025)

From Flat to Round: Redefining Brain Decoding with Surface-Based fMRI and Cortex Structure. - Sijin Yu; Zijiao Chen; Wenxuan Wu; Shengxian Chen; Zhongliang Liu; Jingxin Nie; Xiaofen Xing; Xiangmin Xu; Xin Zhang 013 (CoRR, 2025)