Chinese Named Entity Recognition and Word Segmentation Based on Character. - Jingzhou He; Houfeng Wang (IJCNLP, 2008)

HelixFold-Single: MSA-free Protein Structure Prediction by Using Protein Language Model as an Alternative. - Xiaomin Fang; Fan Wang 021; Lihang Liu; Jingzhou He; Dayong Lin; Yingfei Xiang; Xiaonan Zhang; Hua Wu 003; Hui Li; Le Song (CoRR, 2022)

GEM-2: Next Generation Molecular Property Prediction Network with Many-body and Full-range Interaction Modeling. - Lihang Liu; Donglong He; Xiaomin Fang; Shanzhuo Zhang; Fan Wang 021; Jingzhou He; Hua Wu 003 (CoRR, 2022)

PGLBox: Multi-GPU Graph Learning Framework for Web-Scale Recommendation. - Xuewu Jiao; Weibin Li; Xinxuan Wu; Wei Hu; Miao Li; Jiang Bian 003; Siming Dai; Xinsheng Luo; Mingqing Hu; Zhengjie Huang; Danlei Feng; Junchao Yang; et al. (KDD, 2023)

Pre-Training on Large-Scale Generated Docking Conformations with HelixDock to Unlock the Potential of Protein-ligand Structure Prediction Models. - Lihang Liu; Donglong He; Xianbin Ye; Shanzhuo Zhang; Xiaonan Zhang; Jingbo Zhou; Jun Li; Hua Chai; Fan Wang 021; Jingzhou He; Liang Zheng; Yonghui Li; et al. (CoRR, 2023)

A method for multiple-sequence-alignment-free protein structure prediction using a protein language model. - Xiaomin Fang; Fan Wang 021; Lihang Liu; Jingzhou He; Dayong Lin; Yingfei Xiang; Kunrui Zhu; Xiaonan Zhang; Hua Wu 003; Hui Li; Le Song (Nat. Mac. Intell., 2023)

BioScore: A Foundational Scoring Function For Diverse Biomolecular Complexes. - Yuchen Zhu; Jihong Chen; Yitong Li; Xiaomin Fang; Xianbin Ye; Jingzhou He; Xujun Zhang; Jingxuan Ge; Chao Shen 008; Xiaonan Zhang; Tingjun Hou; Chang-Yu Hsieh (CoRR, 2025)