DeepCCI: a deep learning framework for identifying cell-cell interactions from single-cell RNA sequencing data. - Wenyi Yang; Pingping Wang; Meng Luo 001; Yideng Cai; Chang Xu; Guangfu Xue; Xiyun Jin; Rui Cheng 003; Jinhao Que; Fenglan Pang; Yuexin Yang; Huan Nie; et al. (Bioinform., 2023)

TriCLFF: a multi-modal feature fusion framework using contrastive learning for spatial domain identification. - Fenglan Pang; Guangfu Xue; Wenyi Yang; Yideng Cai; Jinhao Que; Haoxiu Sun; Pingping Wang; Shuaiyu Su; Xiyun Jin; Qian Ding; Zuxiang Wang; Meng Luo 001; et al. (Briefings Bioinform., 2025)