SpliceCannon: A novel framework for the prediction of canonical and non-canonical splice sites based on deep learning. - Yanju Zhang; Wangjing Qi; Ruohan Lin; Jinli Fan (BIBM, 2023)

MATL: A deep neural network using multi-scale convolutions and transformer for transcription factor binding site prediction. - Jinli Fan; Ruyi Shen; Xiaodi Huang; Yanju Zhang (BIBM, 2024)