BSML: bio-synergy modeling language for multi-component and multi-target analysis. - Woochang Hwang; Jaejoon Choi; Jinmyung Jung; Doheon Lee (DTMBIO, 2013)

Inferring disease association using clinical factors in a combinatorial manner and their use in drug repositioning. - Jinmyung Jung; Doheon Lee (Bioinform., 2013)

Construction of Multi-level Networks Incorporating Molecule, Cell, Organ and Phenotype Properties for Drug-induced Phenotype Prediction. - Jinmyung Jung; Hasun Yu; Seyeol Yoon; Mijin Kwon; Sungji Choo; Sangwoo Kim; Doheon Lee (DTMBIO@CIKM, 2014)

Systematic Identification of Context-dependent Conflicting Information in Biological Pathways. - Seyeol Yoon; Jinmyung Jung; Hasun Yu; Mijin Kwon; Sungji Choo; Kyunghyun Park; Dongjin Jang; Sangwoo Kim; Doheon Lee (DTMBIO@CIKM, 2014)

What-if Analysis in Biomedical Networks based on Production Rule System. - Hasun Yu; Jinmyung Jung; Doheon Lee; Sangwoo Kim (DTMBIO@CIKM, 2015)

Development of a Framework for Constructing a Virtual Physiological Human with the Integration of COntext Specific Directed Associations (CODA). - Hasun Yu; Jinmyung Jung; Seyeol Yoon; Mijin Kwon; Yeeok Kang; Sunghwa Bae; Doheon Lee (DTMBIO@CIKM, 2015)

Context-based resolution of semantic conflicts in biological pathways. - Seyeol Yoon; Jinmyung Jung; Hasun Yu; Mijin Kwon; Sungji Choo; Kyunghyun Park; Dongjin Jang; Sangwoo Kim; Doheon Lee (BMC Medical Informatics Decis. Mak., 2015)

Prediction of drugs having opposite effects on disease genes in a directed network. - Hasun Yu; Sungji Choo; Junseok Park; Jinmyung Jung; Yeeok Kang; Doheon Lee (BMC Syst. Biol., 2016)

Petri net-based prediction of therapeutic targets that recover abnormally phosphorylated proteins in muscle atrophy. - Jinmyung Jung; Mijin Kwon; Sunghwa Bae; Soorin Yim; Doheon Lee (BMC Syst. Biol., 2018)

Deconvoluting essential gene signatures for cancer growth from genomic expression in compound-treated cells. - Jinmyung Jung; Yeeok Kang; Hyojung Paik; Mijin Kwon; Hasun Yu; Doheon Lee (Bioinform., 2019)

Characterizing therapeutic signatures of transcription factors in cancer by incorporating profiles in compound treated cells. - Jinmyung Jung (Bioinform., 2021)