DGraph: Algorithms for Shortgun Reads Assembly Using De Bruijn Graph. - Jintao Meng 001; Jianrui Yuan; Jiefeng Cheng; Yanjie Wei; Shengzhong Feng (NPC, 2012)

Small World Asynchronous Parallel Model for Genome Assembly. - Jintao Meng 001; Jianrui Yuan; Jiefeng Cheng; Yanjie Wei; Shengzhong Feng (NPC, 2012)

Improved Parallel Processing of Massive De Bruijn Graph for Genome Assembly. - Li Zeng; Jiefeng Cheng; Jintao Meng 001; Bingqiang Wang; Shengzhong Feng (APWeb, 2013)

An Energy Efficient Clustering Scheme for Data Aggregation in Wireless Sensor Networks. - Jintao Meng 001; Jian-Rui Yuan; Shengzhong Feng; Yanjie Wei (J. Comput. Sci. Technol., 2013)

SWAP-Assembler: scalable and efficient genome assembly towards thousands of cores. - Jintao Meng 001; Bingqiang Wang; Yanjie Wei; Shengzhong Feng; Pavan Balaji (BMC Bioinform., 2014)

SWAP-Assembler 2: Scalable Genome Assembler towards Millions of Cores - Practice and Experience. - Jintao Meng 001; Yanjie Wei; Sangmin Seo; Pavan Balaji (CCGRID, 2015)

SWAP-Assembler 2: Optimization of De Novo Genome Assembler at Extreme Scale. - Jintao Meng 001; Sangmin Seo; Pavan Balaji; Yanjie Wei; Bingqiang Wang; Shengzhong Feng (ICPP, 2016)

Scalable Assembly for Massive Genomic Graphs. - Jintao Meng 001; Ning Guo; Jianqiu Ge; Yanjie Wei; Pavan Balaji; Bingqiang Wang (CCGrid, 2017)

K-mer Counting for Genomic Big Data. - Jianqiu Ge; Ning Guo; Jintao Meng 001; Bingqiang Wang; Pavan Balaji; Shengzhong Feng; Jiaxiu Zhou; Yanjie Wei (BigData Congress, 2018)

FeatherCNN: Fast Inference Computation with TensorGEMM on ARM Architectures. - Haidong Lan; Jintao Meng 001; Christian Hundt 002; Bertil Schmidt; Minwen Deng; Xiaoning Wang; Weiguo Liu; Yu Qiao 001; Shengzhong Feng (IEEE Trans. Parallel Distributed Syst., 2020)

Efficient Phase-Functioned Real-time Character Control in Mobile Games: A TVM Enabled Approach. - Haidong Lan; Wenxi Zhu; Du Wu; Qian Qiu; Honglin Zhu; Jingjing Zhao; Xinghui Fu; Liu Wei; Jintao Meng 001; Minwen Deng (ICPP, 2022)

Simulating Spiking Neural Networks Based on SW26010pro. - Zhichao Wang; Xuelei Li; Jintao Meng 001; Yi Pan 001; Yanjie Wei (ISBRA, 2022)

Improving protein-ligand docking and screening accuracies by incorporating a scoring function correction term. - Liangzhen Zheng; Jintao Meng 001; Kai Jiang; Haidong Lan; Zechen Wang; Mingzhi Lin; Weifeng Li; Hongwei Guo; Yanjie Wei; Yuguang Mu (Briefings Bioinform., 2022)

Persistent Kernels for Iterative Memory-bound GPU Applications. - Lingqi Zhang 001; Mohamed Wahib; Peng Chen 035; Jintao Meng 001; Xiao Wang 004; Satoshi Matsuoka (CoRR, 2022)

nGIA: A novel Greedy Incremental Alignment based algorithm for gene sequence clustering. - Zhen Ju; Huiling Zhang; Jintao Meng 001; Jingjing Zhang; Jianping Fan 002; Yi Pan 001; Weiguo Liu; Xuelei Li; Yanjie Wei (Future Gener. Comput. Syst., 2022)

Automatic Generation of High-Performance Convolution Kernels on ARM CPUs for Deep Learning. - Jintao Meng 001; Chen Zhuang; Peng Chen 035; Mohamed Wahib; Bertil Schmidt; Xiao Wang 004; Haidong Lan; Dou Wu; Minwen Deng; Yanjie Wei; Shengzhong Feng (IEEE Trans. Parallel Distributed Syst., 2022)

Exploiting Scratchpad Memory for Deep Temporal Blocking: A case study for 2D Jacobian 5-point iterative stencil kernel (j2d5pt). - Lingqi Zhang 001; Mohamed Wahib; Peng Chen 035; Jintao Meng 001; Xiao Wang 004; Toshio Endo; Satoshi Matsuoka (GPGPU@PPoPP, 2023)

PERKS: a Locality-Optimized Execution Model for Iterative Memory-bound GPU Applications. - Lingqi Zhang 001; Mohamed Wahib; Peng Chen 035; Jintao Meng 001; Xiao Wang 004; Toshio Endo; Satoshi Matsuoka (ICS, 2023)

Revisiting Temporal Blocking Stencil Optimizations. - Lingqi Zhang 001; Mohamed Wahib; Peng Chen 035; Jintao Meng 001; Xiao Wang 004; Toshio Endo; Satoshi Matsuoka (ICS, 2023)

Autism Spectrum Disorder Classification in Children based on Structural MRI Features Extracted using Contrastive Variational Autoencoder. - Ruimin Ma; Ruitao Xie; Yanlin Wang 003; Jintao Meng 001; Yanjie Wei; Wenhui Xi; Yi Pan 001 (CoRR, 2023)

SWsnn: A Novel Simulator for Spiking Neural Networks. - Zhichao Wang; Xuelei Li; Jianping Fan 002; Jintao Meng 001; Zhenli Lin; Yi Pan 001; Yanjie Wei (J. Comput. Biol., 2023)

Simeuro: A Hybrid CPU-GPU Parallel Simulator for Neuromorphic Computing Chips. - Huaipeng Zhang; Nhut-Minh Ho; Dogukan Yigit Polat; Peng Chen 035; Mohamed Wahib; Truong Thao Nguyen; Jintao Meng 001; Rick Siow Mong Goh; Satoshi Matsuoka; Tao Luo 014; Weng-Fai Wong (IEEE Trans. Parallel Distributed Syst., 2023)

An In-Depth Assessment of Sequence Clustering Software in Bioinformatics. - Zhen Ju; Mingyu Wang; Xuelei Li; Jintao Meng 001; Wenhui Xi; Yanjie Wei (ISBRA (1), 2024)

autoGEMM: Pushing the Limits of Irregular Matrix Multiplication on Arm Architectures. - Du Wu; Jintao Meng 001; Wenxi Zhu; Minwen Deng; Xiao Wang 004; Tao Luo 014; Mohamed Wahib; Yanjie Wei (SC, 2024)

REXIO: Indexing for Low Write Amplification by Reducing Extra I/Os in Key-Value Store Under Mixed Read/Write Workloads. - Zizhao Wang; Qiang Qu; Nan Han; Zhelang Deng; Yizhuo Ma; Xiaowen Huang; Jintao Meng 001 (WISE (1), 2024)

Distributed Heterogeneous Spiking Neural Network Simulator Using Sunway Accelerators. - Xuelei Li; Zhichao Wang; Yi Pan 001; Jintao Meng 001; Shengzhong Feng; Yanjie Wei (Big Data Min. Anal., 2024)

Autism Spectrum Disorder Classification with Interpretability in Children Based on Structural MRI Features Extracted Using Contrastive Variational Autoencoder. - Ruimin Ma; Ruitao Xie; Yanlin Wang 003; Jintao Meng 001; Yanjie Wei; Yunpeng Cai; Wenhui Xi; Yi Pan 001 (Big Data Min. Anal., 2024)

Vortex: Efficient Sample-Free Dynamic Tensor Program Optimization via Hardware-aware Strategy Space Hierarchization. - Yangjie Zhou 001; Honglin Zhu; Qian Qiu; Weihao Cui; Zihan Liu 002; Cong Guo 003; Siyuan Feng; Jintao Meng 001; Haidong Lan; Jingwen Leng; Wenxi Zhu; Minwen Deng (CoRR, 2024)

SeedHit: A GPU Friendly Pre-Align Filtering Algorithm. - Zhen Ju; Jingjing Zhang; Xuelei Li; Jintao Meng 001; Yanjie Wei (IEEE ACM Trans. Comput. Biol. Bioinform., 2024)

ParaCoder: Parallel Code Generation with Large Language Model. - Xiaowen Huang; Xu Zhang; Lvfang Tao; Renjie Mao; Nan Zhou; Wenxi Zhu; Minwen Deng; Jintao Meng 001; Yanjie Wei; Amelie Chi Zhou; Bingqiang Wang; Shengzhong Feng (FCPC@PPOPP, 2025)

NM-SpMM: Accelerating Matrix Multiplication Using N: M Sparsity with GPGPU. - Cong Ma; Du Wu; Zhelang Deng; Jiang Chen; Xiaowen Huang; Jintao Meng 001; Wenxi Zhu; Bingqiang Wang; Amelie Chi Zhou; Peng Chen 035; Minwen Deng; Yanjie Wei; et al. (IPDPS, 2025)

An Efficient Parallel List Ranking Algorithm for Graph Concatenation on BSP Graph System. - Maocheng Cao; Zhelang Deng; Qiucheng Miao; Jintao Meng 001; Yanjie Wei; Jiefeng Cheng (ISBRA (2), 2025)

Attention-Guided Residual U-Net with SE Connection and ASPP for Watershed-Based Cell Segmentation in Microscopy Images. - Jovial Niyogisubizo; Keliang Zhao; Jintao Meng 001; Yi Pan 001; Didi Rosiyadi; Yanjie Wei (J. Comput. Biol., 2025)

NM-SpMM: Accelerating Matrix Multiplication Using N:M Sparsity with GPGPU. - Cong Ma; Du Wu; Zhelang Deng; Jiang Chen; Xiaowen Huang; Jintao Meng 001; Wenxi Zhu; Bingqiang Wang; Amelie Chi Zhou; Peng Chen 035; Minwen Deng; Yanjie Wei; et al. (CoRR, 2025)