ClusterX: a novel representation learning-based deep clustering framework for accurate visual inspection in virtual screening. - Sikang Chen; Jian Gao; Jiexuan Chen; Yufeng Xie; Zheyuan Shen; Lei Xu; Jinxin Che; Jian Wu; Xiaowu Dong (Briefings Bioinform., 2023)

TransFoxMol: predicting molecular property with focused attention. - Jian Gao; Zheyuan Shen; Yufeng Xie; Jialiang Lu; Yang Lu; Sikang Chen; Qingyu Bian; Yue Guo; Liteng Shen; Jian Wu 001; Binbin Zhou; Tingjun Hou; et al. (Briefings Bioinform., 2023)

KnoMol: A Knowledge-Enhanced Graph Transformer for Molecular Property Prediction. - Jian Gao 012; Zheyuan Shen; Yan Lu; Liteng Shen; Binbin Zhou; Donghang Xu; Haibin Dai; Lei Xu; Jinxin Che; Xiaowu Dong (J. Chem. Inf. Model., 2024)

PPI-CoAttNet: A Web Server for Protein-Protein Interaction Tasks Using a Coattention Model. - Qingyu Bian; Zheyuan Shen; Jian Gao; Liteng Shen; Yang Lu; Qing-nan Zhang; Rou-fen Chen; Donghang Xu; Tao Liu; Jinxin Che; Yan Lu; Xiaowu Dong (J. Chem. Inf. Model., 2025)

EvaluationMaster: A GUI Tool for Structure-Based Virtual Screening Evaluation Analysis and Decision-Making Support. - Zheyuan Shen; Rou-fen Chen; Jian Gao 012; Xinglong Chi; Qing-nan Zhang; Qingyu Bian; Binbin Zhou; Jinxin Che; Haibin Dai; Xiaowu Dong (J. Chem. Inf. Model., 2025)