Interestingness of Discovered Association Rules in Terms of Neighborhood-Based Unexpectedness. - Guozhu Dong; Jinyan Li 001 (PAKDD, 1998)

CAEP: Classification by Aggregating Emerging Patterns. - Guozhu Dong; Xiuzhen Zhang 001; Limsoon Wong; Jinyan Li 001 (Discovery Science, 1999)

Efficient Mining of Emerging Patterns: Discovering Trends and Differences. - Guozhu Dong; Jinyan Li 001 (KDD, 1999)

Efficient Mining of High Confidience Association Rules without Support Thresholds. - Jinyan Li 001; Xiuzhen Zhang 001; Guozhu Dong; Kotagiri Ramamohanarao; Qun Sun (PKDD, 1999)

Emerging Patterns and Classification. - Jinyan Li 001; Kotagiri Ramamohanarao; Guozhu Dong (ASIAN, 2000)

The Space of Jumping Emerging Patterns and Its Incremental Maintenance Algorithms. - Jinyan Li 001; Kotagiri Ramamohanarao; Guozhu Dong (ICML, 2000)

Instance-Based Classification by Emerging Patterns. - Jinyan Li 001; Guozhu Dong; Kotagiri Ramamohanarao (PKDD, 2000)

Combining the Strength of Pattern Frequency and Distance for Classification. - Jinyan Li 001; Kotagiri Ramamohanarao; Guozhu Dong (PAKDD, 2001)

Making Use of the Most Expressive Jumping Emerging Patterns for Classification. - Jinyan Li 001; Guozhu Dong; Kotagiri Ramamohanarao (Knowl. Inf. Syst., 2001)

Solving the Fragmentation Problem of Decision Trees by Discovering Boundary Emerging Patterns. - Jinyan Li 001; Limsoon Wong (ICDM, 2002)

Geography of Differences between Two Classes of Data. - Jinyan Li 001; Limsoon Wong (PKDD, 2002)

Identifying good diagnostic gene groups from gene expression profiles using the concept of emerging patterns. - Jinyan Li 001; Limsoon Wong (Bioinform., 2002)

From Informatics to Bioinformatics. - Vladimir B. Bajic; Vladimir Brusic; Jinyan Li 001; See-Kiong Ng; Limsoon Wong (APBC, 2003)

Feature Space Transformation and Decision Results Interpretation. - Jinyan Li 001; Hwee-Leng Ong (APBC, 2003)

Discovery of significant rules for classifying cancer diagnosis data. - Jinyan Li 001; Huiqing Liu; See-Kiong Ng; Limsoon Wong (ECCB, 2003)

Ensembles of Cascading Trees. - Jinyan Li 001; Huiqing Liu (ICDM, 2003)

Bioinformatics Adventures in Database Research. - Jinyan Li 001; See-Kiong Ng; Limsoon Wong (ICDT, 2003)

Mean-entropy discretized features are effective for classifying high-dimensional biomedical data. - Jinyan Li 001; Huiqing Liu; Limsoon Wong (BIOKDD, 2003)

Using Rules to Analyse Bio-medical Data: A Comparison between C4.5 and PCL. - Jinyan Li 001; Limsoon Wong (WAIM, 2003)

Simple rules underlying gene expression profiles of more than six subtypes of acute lymphoblastic leukemia (ALL) patients. - Jinyan Li 001; Huiqing Liu; James R. Downing; Allen Eng-Juh Yeoh; Limsoon Wong (Bioinform., 2003)

Use of Built-in Features in the Interpretation of High-dimensional Cancer Diagnosis Data.. - Jinyan Li 001; Huiqing Liu; Limsoon Wong (APBC, 2004)

Selection of Patient Samples and Genes for Outcome Prediction. - Huiqing Liu; Jinyan Li 001; Limsoon Wong (CSB, 2004)

A Tree-Based Approach to the Discovery of Diagnostic Biomarkers for Ovarian Cancer. - Jinyan Li 001; Kotagiri Ramamohanarao (PAKDD, 2004)

Discovery of Binding Motif Pairs from Protein Complex Structural Data and Protein Interaction Sequence Data. - Haiquan Li; Jinyan Li 001; Soon-Heng Tan; See-Kiong Ng (Pacific Symposium on Biocomputing, 2004)

Feature Space Transformation for Better Understanding Biological and Medical Classifications. - Jinyan Li 001; Hwee-Leng Ong (J. Res. Pract. Inf. Technol., 2004)

Twelve C2H2 zinc-finger genes on human chromosome 19 can be each translated into the same type of protein after frameshifts. - Shao-Wu Meng; Zhuo Zhang; Jinyan Li 001 (Bioinform., 2004)

Incremental Maintenance on the Border of the Space of Emerging Patterns. - Jinyan Li 001; Thomas Manoukian; Guozhu Dong; Kotagiri Ramamohanarao (Data Min. Knowl. Discov., 2004)

Using amino acid patterns to accurately predict translation initiation sites. - Huiqing Liu; Hao Han; Jinyan Li 001; Limsoon Wong (Silico Biol., 2004)

DeEPs: A New Instance-Based Lazy Discovery and Classification System. - Jinyan Li 001; Guozhu Dong; Kotagiri Ramamohanarao; Limsoon Wong (Mach. Learn., 2004)

Diagnostic Rules Induced by an Ensemble Method for Childhood Leukemia. - Jinyan Li 001; Huiqing Liu; Ling Li (BIBE, 2005)

Mining Succinct Systems of Minimal Generators of Formal Concepts. - Guozhu Dong; Chunyu Jiang; Jian Pei 001; Jinyan Li 001; Limsoon Wong (DASFAA, 2005)

A Correspondence Between Maximal Complete Bipartite Subgraphs and Closed Patterns. - Jinyan Li 001; Haiquan Li; Donny Soh; Limsoon Wong (PKDD, 2005)

Relative risk and odds ratio: a data mining perspective. - Haiquan Li; Jinyan Li 001; Limsoon Wong; Mengling Feng; Yap-Peng Tan (PODS, 2005)

Discovery of stable and significant binding motif pairs from PDB complexes and protein interaction datasets. - Haiquan Li; Jinyan Li 001 (Bioinform., 2005)

DNAFSMiner: a web-based software toolbox to recognize two types of functional sites in DNA sequences. - Huiqing Liu; Hao Han; Jinyan Li 001; Limsoon Wong (Bioinform., 2005)

Use of extreme patient samples for outcome prediction from gene expression data. - Huiqing Liu; Jinyan Li 001; Limsoon Wong (Bioinform., 2005)

Guest Editors' Introduction: Data Mining in Bioinformatics. - Jinyan Li 001; Limsoon Wong; Qiang Yang 001 (IEEE Intell. Syst., 2005)

Structural geography of the space of emerging patterns. - Jinyan Li 001; Limsoon Wong (Intell. Data Anal., 2005)

Mining border descriptions of emerging patterns from dataset pairs. - Guozhu Dong; Jinyan Li 001 (Knowl. Inf. Syst., 2005)

Efficient selection of discriminative genes from microarray gene expression data for cancer diagnosis. - Di Huang 002; Tommy W. S. Chow; Eden W. M. Ma; Jinyan Li 001 (IEEE Trans. Circuits Syst. I Regul. Pap., 2005)

Using Fixed Point Theorems to Model the Binding in Protein-Protein Interactions. - Jinyan Li 001; Haiquan Li (IEEE Trans. Knowl. Data Eng., 2005)

Minimum Description Length Principle: Generators Are Preferable to Closed Patterns. - Jinyan Li 001; Haiquan Li; Limsoon Wong; Jian Pei 001; Guozhu Dong (AAAI, 2006)

COWES: Clustering Web Users Based on Historical Web Sessions. - Ling Chen 006; Sourav S. Bhowmick; Jinyan Li 001 (DASFAA, 2006)

Efficient Mining of Large Maximal Bicliques. - Guimei Liu; Kelvin Sim; Jinyan Li 001 (DaWaK, 2006)

Mining Maximal Quasi-Bicliques to Co-Cluster Stocks and Financial Ratios for Value Investment. - Kelvin Sim; Jinyan Li 001; Vivekanand Gopalkrishnan; Guimei Liu (ICDM, 2006)

Mining Temporal Indirect Associations. - Ling Chen 006; Sourav S. Bhowmick; Jinyan Li 001 (PAKDD, 2006)

Bayesian Approaches to Ranking Sequential Patterns Interestingness. - Kuralmani Vellaisamy; Jinyan Li 001 (PRICAI, 2006)

Positive Borders or Negative Borders: How to Make Lossless Generator Based Representations Concise. - Guimei Liu; Jinyan Li 001; Limsoon Wong; Wynne Hsu (SDM, 2006)

Discovering motif pairs at interaction sites from protein sequences on a proteome-wide scale. - Haiquan Li; Jinyan Li 001; Limsoon Wong (Bioinform., 2006)

Distance Based Subspace Clustering with Flexible Dimension Partitioning. - Guimei Liu; Jinyan Li 001; Kelvin Sim; Limsoon Wong (ICDE, 2007)

Mining statistically important equivalence classes and delta-discriminative emerging patterns. - Jinyan Li 001; Guimei Liu; Limsoon Wong (KDD, 2007)

Evolution and Maintenance of Frequent Pattern Space When Transactions Are Removed. - Mengling Feng; Guozhu Dong; Jinyan Li 001; Yap-Peng Tan; Limsoon Wong (PAKDD, 2007)

Workshop BioDM'07 - An Overview. - Jinyan Li 001; Xiaohua Hu 001 (PAKDD Workshops, 2007)

Multidimensional Decision Support Indicator (mDSI) for Time Series Stock Trend Prediction. - Kuralmani Vellaisamy; Jinyan Li 001 (PAKDD, 2007)

Discovering Patterns of DNA Methylation: Rule Mining with Rough Sets and Decision Trees, and Comethylation Analysis. - Ben Niu 002; Qiang Yang 001; Jinyan Li 001; Shiu Chi-keung; Sankar K. Pal (PReMI, 2007)

Strong Compound-Risk Factors: Efficient Discovery Through Emerging Patterns and Contrast Sets. - Jinyan Li 001; Qiang Yang 001 (IEEE Trans. Inf. Technol. Biomed., 2007)

Maximal Biclique Subgraphs and Closed Pattern Pairs of the Adjacency Matrix: A One-to-One Correspondence and Mining Algorithms. - Jinyan Li 001; Guimei Liu; Haiquan Li; Limsoon Wong (IEEE Trans. Knowl. Data Eng., 2007)

Negative Generator Border for Effective Pattern Maintenance. - Mengling Feng; Jinyan Li 001; Limsoon Wong; Yap-Peng Tan (ADMA, 2008)

Interacting Amino Acid Preferences of 3D Pattern Pairs at the Binding Sites of Transient and Obligate Protein Complexes. - Suryani Lukman; Kelvin Sim; Jinyan Li 001; Yi-Ping Phoebe Chen (APBC, 2008)

Quasi-bicliques: Complexity and Binding Pairs. - Xiaowen Liu; Jinyan Li 001; Lusheng Wang 001 (COCOON, 2008)

Maximal Quasi-Bicliques with Balanced Noise Tolerance: Concepts and Co-clustering Applications. - Jinyan Li 001; Kelvin Sim; Guimei Liu; Limsoon Wong (SDM, 2008)

Mining and Ranking Generators of Sequential Patterns. - David Lo 001; Siau-Cheng Khoo; Jinyan Li 001 (SDM, 2008)

A new concise representation of frequent itemsets using generators and a positive border. - Guimei Liu; Jinyan Li 001; Limsoon Wong (Knowl. Inf. Syst., 2008)

Discovery of Migration Habitats and Routes of Wild Bird Species by Clustering and Association Analysis. - MingJie Tang; Yuanchun Zhou; Peng Cui; Weihang Wang 001; Jinyan Li 001; Haiting Zhang; YuanSheng Hou; Baoping Yan (ADMA, 2009)

High Functional Coherence in k-Partite Protein Cliques of Protein Interaction Networks. - Qian Liu 014; Yi-Ping Phoebe Chen; Jinyan Li 001 (BIBM, 2009)

'Double water exclusion': a hypothesis refining the O-ring theory for the hot spots at protein interfaces. - Jinyan Li 001; Qian Liu 014 (Bioinform., 2009)

PADS: a simple yet effective pattern-aware dynamic search method for fast maximal frequent pattern mining. - Xinghuo Zeng; Jian Pei 001; Ke Wang 001; Jinyan Li 001 (Knowl. Inf. Syst., 2009)

Efficient mining of distance-based subspace clusters. - Guimei Liu; Kelvin Sim; Jinyan Li 001; Limsoon Wong (Stat. Anal. Data Min., 2009)

Mining maximal quasi-bicliques: Novel algorithm and applications in the stock market and protein networks. - Kelvin Sim; Jinyan Li 001; Vivekanand Gopalkrishnan; Guimei Liu (Stat. Anal. Data Min., 2009)

Discovery of Protein Interaction Sites. - Haiquan Li; Jinyan Li 001; Xuechun Zhao (Encyclopedia of Data Warehousing and Mining, 2009)

Applications of Emerging Patterns for Microarray Gene Expression Data Analysis. - Guozhu Dong; Jinyan Li 001 (Encyclopedia of Database Systems, 2009)

Emerging Pattern Based Classification. - Guozhu Dong; Jinyan Li 001 (Encyclopedia of Database Systems, 2009)

Emerging Patterns. - Guozhu Dong; Jinyan Li 001 (Encyclopedia of Database Systems, 2009)

Birds Bring Flues? Mining Frequent and High Weighted Cliques from Birds Migration Networks. - MingJie Tang; Weihang Wang 001; Yexi Jiang; Yuanchun Zhou; Jinyan Li 001; Peng Cui; Ying Liu 039; Baoping Yan (DASFAA (2), 2010)

Negative correlations in collaboration: concepts and algorithms. - Jinyan Li 001; Qian Liu 014; Tao Zeng (KDD, 2010)

Sequence-based identification of interface residues by an integrative profile combining hydrophobic and evolutionary information. - Peng Chen 001; Jinyan Li 001 (BMC Bioinform., 2010)

Protein binding hot spots and the residue-residue pairing preference: a water exclusion perspective. - Qian Liu 014; Jinyan Li 001 (BMC Bioinform., 2010)

Discovering conditional co-regulated protein complexes by integrating diverse data sources. - Fei Luo 004; Juan Liu 007; Jinyan Li 001 (BMC Syst. Biol., 2010)

Pattern Space Maintenance for Data Updates and Interactive Mining. - Mengling Feng; Guozhu Dong; Jinyan Li 001; Yap-Peng Tan; Limsoon Wong (Comput. Intell., 2010)

Insights into Bacterial Genome Composition through Variable Target GC Content Profiling. - Scott Mann; Jinyan Li 001; Yi-Ping Phoebe Chen (J. Comput. Biol., 2010)

Modeling Protein Interacting Groups by Quasi-Bicliques: Complexity, Algorithm, and Application. - Xiaowen Liu; Jinyan Li 001; Lusheng Wang 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2010)

Structural analysis of the hot spots in the binding between H1N1 HA and the 2D1 antibody: do mutations of H1N1 from 1918 to 2009 affect much on this binding? - Qian Liu 014; Steven C. H. Hoi; Chinh T. T. Su; Zhenhua Li; Chee Keong Kwoh 001; Limsoon Wong; Jinyan Li 001 (Bioinform., 2011)

DBAC: A simple prediction method for protein binding hot spots based on burial levels and deeply buried atomic contacts. - Zhenhua Li; Limsoon Wong; Jinyan Li 001 (BMC Syst. Biol., 2011)

A case study on financial ratios via cross-graph quasi-bicliques. - Kelvin Sim; Guimei Liu; Vivekanand Gopalkrishnan; Jinyan Li 001 (Inf. Sci., 2011)

Exploring the wild birds' migration data for the disease spread study of H5N1: a clustering and association approach. - MingJie Tang; Yuanchun Zhou; Jinyan Li 001; Weihang Wang 001; Peng Cui; YuanSheng Hou; Ze Luo; Jianhui Li; Fuming Lei; Baoping Yan (Knowl. Inf. Syst., 2011)

Antibody-Specified B-Cell Epitope Prediction in Line with the Principle of Context-Awareness. - Liang Zhao; Limsoon Wong; Jinyan Li 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2011)

Mining Iterative Generators and Representative Rules for Software Specification Discovery. - David Lo 001; Jinyan Li 001; Limsoon Wong; Siau-Cheng Khoo (IEEE Trans. Knowl. Data Eng., 2011)

Model the complex dependence structures of financial variables by using canonical vine. - Wei Wei 039; Xuhui Fan 001; Jinyan Li 001; Longbing Cao (CIKM, 2012)

Progressive dry-core-wet-rim hydration trend in a nested-ring topology of protein binding interfaces. - Zhenhua Li; Ying He 001; Limsoon Wong; Jinyan Li 001 (BMC Bioinform., 2012)

B-cell epitope prediction through a graph model. - Liang Zhao; Limsoon Wong; Lanyuan Lu; Steven C. H. Hoi; Jinyan Li 001 (BMC Bioinform., 2012)

Conservation of water molecules in protein binding interfaces. - Zhenhua Li; Ying He 001; Longbing Cao; Limsoon Wong; Jinyan Li 001 (Int. J. Bioinform. Res. Appl., 2012)

Detection of Outlier Residues for Improving Interface Prediction in Protein Heterocomplexes. - Peng Chen 001; Limsoon Wong; Jinyan Li 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2012)

Emerging Pattern Based Rules Characterizing Subtypes of Leukemia. - Jinyan Li 001; Limsoon Wong (Contrast Data Mining, 2013)

A seven-core photonic crystal fiber with high beam quality. - Huifeng Wei; Gelin Zhang; Peiguang Yan; Jiang Li; Xinben Zhang; Weijun Tong; Jie Luo; Jinyan Li 001; Kangkang Chen (OFC/NFOEC, 2013)

Optimal Allocation of High Dimensional Assets through Canonical Vines. - Wei Wei 039; Jinyan Li 001; Longbing Cao; Jingguang Sun; Chunming Liu; Mu Li (PAKDD (1), 2013)

Structural analysis on mutation residues and interfacial water molecules for human TIM disease understanding. - Zhenhua Li; Ying He 001; Qian Liu 014; Liang Zhao; Limsoon Wong; Chee Keong Kwoh 001; Hung T. Nguyen 001; Jinyan Li 001 (BMC Bioinform., 2013)

Binding Affinity Prediction for Protein-Ligand Complexes Based on β Contacts and B Factor. - Qian Liu 014; Chee Keong Kwoh 001; Jinyan Li 001 (J. Chem. Inf. Model., 2013)

Risk Prediction for Acute Hypotensive Patients by Using Gap Constrained Sequential Contrast Patterns. - Shameek Ghosh; Mengling Feng; Hung T. Nguyen 001; Jinyan Li 001 (AMIA, 2014)

Predicting Heart Beats using Co-occurring Constrained Sequential Patterns. - Shameek Ghosh; Mengling Feng; Hung T. Nguyen 001; Jinyan Li 001 (CinC, 2014)

Modeling Asymmetry and Tail Dependence among Multiple Variables by Using Partial Regular Vine. - Wei Wei 039; Junfu Yin; Jinyan Li 001; Longbing Cao (SDM, 2014)

Geodesic Voronoi Diagrams with Polyline Generators. - Chunxu Xu; Yong-Jin Liu 001; Qian Sun 003; Jinyan Li 001; Ying He 001 (SGP Posters, 2014)

Tertiary structure-based prediction of conformational B-cell epitopes through B factors. - Jing Ren; Qian Liu 014; John T. Ellis; Jinyan Li 001 (Bioinform., 2014)

Integrating water exclusion theory into βcontacts to predict binding free energy changes and binding hot spots. - Qian Liu 014; Steven C. H. Hoi; Chee Keong Kwoh 001; Limsoon Wong; Jinyan Li 001 (BMC Bioinform., 2014)

Use B-factor related features for accurate classification between protein binding interfaces and crystal packing contacts. - Qian Liu 014; Zhenhua Li; Jinyan Li 001 (BMC Bioinform., 2014)

Polyline-sourced Geodesic Voronoi Diagrams on Triangle Meshes. - Chunxu Xu; Yong-Jin Liu 001; Qian Sun 003; Jinyan Li 001; Ying He 001 (Comput. Graph. Forum, 2014)

Bird Flu Outbreak Prediction via Satellite Tracking. - Yuanchun Zhou; MingJie Tang; Weike Pan; Jinyan Li 001; Weihang Wang 001; Jing Shao; Liang Wu 011; Jianhui Li; Qiang Yang 001; Baoping Yan (IEEE Intell. Syst., 2014)

PPI-IRO: a two-stage method for protein-protein interaction extraction based on interaction relation ontology. - Chuanxi Li; Peng Chen 001; Rujing Wang; Xiu-Jie Wang; Yaru Su; Jinyan Li 001 (Int. J. Data Min. Bioinform., 2014)

Influenza A HA's conserved epitopes and broadly neutralizing antibodies: A prediction method. - Jing Ren; John T. Ellis; Jinyan Li 001 (J. Bioinform. Comput. Biol., 2014)

Coupling Graphs, Efficient Algorithmsand B-Cell Epitope Prediction. - Liang Zhao; Steven C. H. Hoi; Zhenhua Li; Limsoon Wong; Hung T. Nguyen 001; Jinyan Li 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2014)

Connecting rules from paired miRNA and mRNA expression data sets of HCV patients to detect both inverse and positive regulatory relationships. - Renhua Song; Qian Liu 014; Tao Liu 031; Jinyan Li 001 (BMC Genom., 2015)

Laplacian normalization and random walk on heterogeneous networks for disease-gene prioritization. - Zhi-Qin Zhao; Guo-Sheng Han; Zu-Guo Yu; Jinyan Li 001 (Comput. Biol. Chem., 2015)

Automatic classification for field crop insects via multiple-task sparse representation and multiple-kernel learning. - Chengjun Xie; Jie Zhang 033; Rui Li 027; Jinyan Li 001; Peilin Hong; Junfeng Xia; Peng Chen 001 (Comput. Electron. Agric., 2015)

Burial Level Change Defines a High Energetic Relevance for Protein Binding Interfaces. - Zhenhua Li; Ying He 001; Limsoon Wong; Jinyan Li 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2015)

Deriving Public Sector Workforce Insights: A Case Study Using Australian Public Sector Employment Profiles. - Shameek Ghosh; Yi Zheng 002; Thorsten Lammers; Ying-Ying Chen; Carolyn Fitzmaurice; Scott Johnston; Jinyan Li 001 (ADMA, 2016)

Efficient Mining of Pan-Correlation Patterns from Time Course Data. - Qian Liu 014; Jinyan Li 001; Limsoon Wong; Kotagiri Ramamohanarao (ADMA, 2016)

Predicting short-term ICU outcomes using a sequential contrast motif based classification framework. - Shameek Ghosh; Hung T. Nguyen 001; Jinyan Li 001 (EMBC, 2016)

Using constrained information entropy to detect rare adverse drug reactions from medical forums. - Yi Zheng 002; Chaowang Lan; Hui Peng; Jinyan Li 001 (EMBC, 2016)

Depth-First Search Encoding of RNA Substructures. - Qingfeng Chen; Chaowang Lan; Jinyan Li 001; Baoshan Chen; Lusheng Wang 001; Chengqi Zhang (ICIC (1), 2016)

Coordinating Discernibility and Independence Scores of Variables in a 2D Space for Efficient and Accurate Feature Selection. - Juanying Xie; Mingzhao Wang; Ying Zhou; Jinyan Li 001 (ICIC (3), 2016)

Grouping miRNAs of similar functions via weighted information content of gene ontology. - Chaowang Lan; Qingfeng Chen; Jinyan Li 001 (BMC Bioinform., 2016)

Estimation of NON-WSSUS Channel for OFDM System: Exploiting Support Correlations through a Novel Adaptive Weighted Predict-Re-Estimate L1 Minimization. - Chen Wang; Yong Fang; Jinyan Li 001 (J. Commun., 2016)

A Sequence-Based Dynamic Ensemble Learning System for Protein Ligand-Binding Site Prediction. - Peng Chen 001; ShanShan Hu; Jun Zhang 011; Xin Gao 001; Jinyan Li 001; Junfeng Xia; Bing Wang 004 (IEEE ACM Trans. Comput. Biol. Bioinform., 2016)

Hypotension Risk Prediction via Sequential Contrast Patterns of ICU Blood Pressure. - Shameek Ghosh; Mengling Feng; Hung T. Nguyen 001; Jinyan Li 001 (IEEE J. Biomed. Health Informatics, 2016)

An Optimized Drug Similarity Framework for Side-effect Prediction. - Yi Zheng 002; Shameek Ghosh; Jinyan Li 001 (CinC, 2017)

Structure embedding for knowledge base completion and analytics. - Zili Zhou; Guandong Xu; Wenhao Zhu; Jinyan Li 001; Wu Zhang (IJCNN, 2017)

High-speed and high-ratio referential genome compression. - Yuansheng Liu; Hui Peng; Limsoon Wong; Jinyan Li 001 (Bioinform., 2017)

MapReduce for accurate error correction of next-generation sequencing data. - Liang Zhao; Qingfeng Chen; Wencui Li; Peng Jiang; Limsoon Wong; Jinyan Li 001 (Bioinform., 2017)

Cross disease analysis of co-functional microRNA pairs on a reconstructed network of disease-gene-microRNA tripartite. - Hui Peng; Chaowang Lan; Yi Zheng 002; Gyorgy Hutvagner; Dacheng Tao; Jinyan Li 001 (BMC Bioinform., 2017)

Staged heterogeneity learning to identify conformational B-cell epitopes from antigen sequences. - Jing Ren; Jiangning Song; John T. Ellis; Jinyan Li 001 (BMC Genom., 2017)

Septic shock prediction for ICU patients via coupled HMM walking on sequential contrast patterns. - Shameek Ghosh; Jinyan Li 001; Longbing Cao; Kotagiri Ramamohanarao (J. Biomed. Informatics, 2017)

Using propensity scores to predict the kinases of unannotated phosphopeptides. - Qingfeng Chen; Yiqi Wang 008; Baoshan Chen; Chengqi Zhang; Lusheng Wang 001; Jinyan Li 001 (Knowl. Based Syst., 2017)

Exploring Consensus RNA Substructural Patterns Using Subgraph Mining. - Qingfeng Chen; Chaowang Lan; Baoshan Chen; Lusheng Wang 001; Jinyan Li 001; Chengqi Zhang (IEEE ACM Trans. Comput. Biol. Bioinform., 2017)

Uncovering Discriminative Knowledge-Guided Medical Concepts for Classifying Coronary Artery Disease Notes. - Mahdi Abdollahi; Xiaoying Gao; Yi Mei 001; Shameek Ghosh; Jinyan Li 001 (Australasian Conference on Artificial Intelligence, 2018)

Distinction Between Ships and Icebergs in SAR Images Using Ensemble Loss Trained Convolutional Neural Networks. - Xiaocai Zhang; Yuansheng Liu; Yi Zheng 002; Zhixun Zhao; Jinyan Li 001; Yang Liu (Australasian Conference on Artificial Intelligence, 2018)

Version Space Completeness for Novel Hypothesis Induction in Biomedical Applications. - Jinyan Li 001 (IJCNN, 2018)

Connectivity Based Method for Clustering Microbial Communities from Metagenomics Data of Water and Soil Samples. - Jessica S. Rahman; Jinyan Li 001; Juanying Xie; Shoshana Fogelman; Michael Blumenstein (IJCNN, 2018)

Predicting Drug Targets from Heterogeneous Spaces using Anchor Graph Hashing and Ensemble Learning. - Yi Zheng 002; Hui Peng; Xiaocai Zhang; Xiaoying Gao; Jinyan Li 001 (IJCNN, 2018)

CRISPR/Cas9 cleavage efficiency regression through boosting algorithms and Markov sequence profiling. - Hui Peng; Yi Zheng 002; Michael Blumenstein; Dacheng Tao; Jinyan Li 001 (Bioinform., 2018)

Recognition of CRISPR/Cas9 off-target sites through ensemble learning of uneven mismatch distributions. - Hui Peng; Yi Zheng 002; Zhixun Zhao; Tao Liu 031; Jinyan Li 001 (Bioinform., 2018)

Novel overlapping subgraph clustering for the detection of antigen epitopes. - Liang Zhao; Shaogui Wu; Jiawen Jiang; Wencui Li; Jie Luo; Jinyan Li 001 (Bioinform., 2018)

dbMPIKT: a database of kinetic and thermodynamic mutant protein interactions. - Quanya Liu; Peng Chen 001; Bing Wang 004; Jun Zhang 011; Jinyan Li 001 (BMC Bioinform., 2018)

Identification of pre-microRNAs by characterizing their sequence order evolution information and secondary structure graphs. - Yuanlin Ma; Zu-Guo Yu; Guo-Sheng Han; Jinyan Li 001; Vo Anh (BMC Bioinform., 2018)

Prediction of 8-state protein secondary structures by a novel deep learning architecture. - Buzhong Zhang; Jinyan Li 001; Qiang Lü (BMC Bioinform., 2018)

Predicting adverse drug reactions of combined medication from heterogeneous pharmacologic databases. - Yi Zheng 002; Hui Peng; Xiaocai Zhang; Zhixun Zhao; Jie Yin 001; Jinyan Li 001 (BMC Bioinform., 2018)

Hot spot prediction in protein-protein interactions by an ensemble system. - Quanya Liu; Peng Chen 001; Bing Wang 004; Jun Zhang 011; Jinyan Li 001 (BMC Syst. Biol., 2018)

Discovering pan-correlation patterns from time course data sets by efficient mining algorithms. - Qian Liu 014; Shameek Ghosh; Jinyan Li 001; Limsoon Wong; Kotagiri Ramamohanarao (Computing, 2018)

Introduction to Selected Papers from GIW2018. - Jinyan Li 001; Kenta Nakai; Yun Zheng; Kengo Sato; Limsoon Wong (J. Bioinform. Comput. Biol., 2018)

Applications of Emerging Patterns for Microarray Gene Expression Data Analysis. - Guozhu Dong; Jinyan Li 001 (Encyclopedia of Database Systems (2nd ed.), 2018)

Emerging Pattern Based Classification. - Guozhu Dong; Jinyan Li 001 (Encyclopedia of Database Systems (2nd ed.), 2018)

Emerging Patterns. - Guozhu Dong; Jinyan Li 001 (Encyclopedia of Database Systems (2nd ed.), 2018)

An Ontology-based Two-Stage Approach to Medical Text Classification with Feature Selection by Particle Swarm Optimisation. - Mahdi Abdollahi; Xiaoying Gao; Yi Mei 001; Shameek Ghosh; Jinyan Li 001 (CEC, 2019)

Stratifying Risk of Coronary Artery Disease Using Discriminative Knowledge-Guided Medical Concept Pairings from Clinical Notes. - Mahdi Abdollahi; Xiaoying Gao; Yi Mei 001; Shameek Ghosh; Jinyan Li 001 (PRICAI (3), 2019)

Detection of Anomalous Traffic Patterns and Insight Analysis from Bus Trajectory Data. - Xiaocai Zhang; Xuan Zhang 010; Sunny Verma; Yuansheng Liu; Michael Blumenstein; Jinyan Li 001 (PRICAI (3), 2019)

Index suffix-prefix overlaps by (w, k)-minimizer to generate long contigs for reads compression. - Yuansheng Liu; Zu-Guo Yu; Marcel E. Dinger; Jinyan Li 001 (Bioinform., 2019)

Fast detection of maximal exact matches via fixed sampling of query K-mers and Bloom filtering of index K-mers. - Yuansheng Liu; Leo Yu Zhang; Jinyan Li 001 (Bioinform., 2019)

Inverse similarity and reliable negative samples for drug side-effect prediction. - Yi Zheng 002; Hui Peng; Shameek Ghosh; Chaowang Lan; Jinyan Li 001 (BMC Bioinform., 2019)

DDI-PULearn: a positive-unlabeled learning method for large-scale prediction of drug-drug interactions. - Yi Zheng 002; Hui Peng; Xiaocai Zhang; Zhixun Zhao; Xiaoying Gao; Jinyan Li 001 (BMC Bioinform., 2019)

Sequence-based prediction of protein-protein interaction sites by simplified long short-term memory network. - Buzhong Zhang; Jinyan Li 001; Lijun Quan; Yu Chen 064; Qiang Lü (Neurocomputing, 2019)

Old drug repositioning and new drug discovery through similarity learning from drug-target joint feature spaces. - Yi Zheng 002; Hui Peng; Xiaocai Zhang; Zhixun Zhao; Xiaoying Gao; Jinyan Li 001 (BMC Bioinform., 2019)

Ontology-Guided Data Augmentation for Medical Document Classification. - Mahdi Abdollahi; Xiaoying Gao; Yi Mei 001; Shameek Ghosh; Jinyan Li 001 (AIME, 2020)

A Dictionary-based Oversampling Approach to Clinical Document Classification on Small and Imbalanced Dataset. - Mahdi Abdollahi; Xiaoying Gao; Yi Mei 001; Shameek Ghosh; Jinyan Li 001 (WI/IAT, 2020)

Allowing mutations in maximal matches boosts genome compression performance. - Yuansheng Liu; Limsoon Wong; Jinyan Li 001 (Bioinform., 2020)

Bi-Level Error Correction for PacBio Long Reads. - Yuansheng Liu; Chaowang Lan; Michael Blumenstein; Jinyan Li 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2020)

Guest Editorial for the 29th International Conference on Genome Informatics (GIW 2018). - Jie Zheng 002; Jinyan Li 001; Yun Zheng (IEEE ACM Trans. Comput. Biol. Bioinform., 2020)

Prediction of Taxi Destinations Using a Novel Data Embedding Method and Ensemble Learning. - Xiaocai Zhang; Zhixun Zhao; Yi Zheng 002; Jinyan Li 001 (IEEE Trans. Intell. Transp. Syst., 2020)

Substituting clinical features using synthetic medical phrases: Medical text data augmentation techniques. - Mahdi Abdollahi; Xiaoying Gao; Yi Mei 001; Shameek Ghosh; Jinyan Li 001; Michael Narag (Artif. Intell. Medicine, 2021)

Single-cell multi-omics sequencing: application trends, COVID-19, data analysis issues and prospects. - Lu Huo; Jiao Jiao Li; Ling Chen 006; Zuguo Yu; Gyorgy Hutvagner; Jinyan Li 001 (Briefings Bioinform., 2021)

Sequencing dropout-and-batch effect normalization for single-cell mRNA profiles: a survey and comparative analysis. - Tian Lan; Gyorgy Hutvagner; Qing Lan; Tao Liu 031; Jinyan Li 001 (Briefings Bioinform., 2021)

Multigene editing: current approaches and beyond. - Hui Peng; Yi Zheng 002; Zhixun Zhao; Jinyan Li 001 (Briefings Bioinform., 2021)

Genetic source completeness of HIV-1 circulating recombinant forms (CRFs) predicted by multi-label learning. - Runbin Tang; Zuguo Yu; Yuanlin Ma; Yaoqun Wu; Yi-Ping Phoebe Chen; Limsoon Wong; Jinyan Li 001 (Bioinform., 2021)

Instance-based error correction for short reads of disease-associated genes. - Xuan Zhang 010; Yuansheng Liu; Zuguo Yu; Michael Blumenstein; Gyorgy Hutvagner; Jin-Yan Li 001 (BMC Bioinform., 2021)

Transformation of FASTA files into feature vectors for unsupervised compression of short reads databases. - Tao Tang; Jinyan Li 001 (J. Bioinform. Comput. Biol., 2021)

Deep learning detection of anomalous patterns from bus trajectories for traffic insight analysis. - Xiaocai Zhang; Yi Zheng 002; Zhixun Zhao; Yuansheng Liu; Michael Blumenstein; Jinyan Li 001 (Knowl. Based Syst., 2021)

A Convolutional Neural Network System to Discriminate Drug-Target Interactions. - ShanShan Hu; DeNan Xia; Benyue Su; Peng Chen 001; Bing Wang 004; Jin-Yan Li 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2021)

FUNMarker: Fusion Network-Based Method to Identify Prognostic and Heterogeneous Breast Cancer Biomarkers. - Xingyi Li; Ju Xiang; Jianxin Wang 001; Jinyan Li 001; Fang-Xiang Wu; Min Li 007 (IEEE ACM Trans. Comput. Biol. Bioinform., 2021)

Detection of spam reviews through a hierarchical attention architecture with N-gram CNN and Bi-LSTM. - Yuxin Liu; Li Wang; Tengfei Shi; Jinyan Li 001 (Inf. Syst., 2022)

ARDE-N-BEATS: An Evolutionary Deep Learning Framework for Urban Traffic Flow Prediction. - Xiaocai Zhang; Zhixun Zhao; Jinyan Li 001 (IEEE Internet Things J., 2023)

An Ontology-based Three-Stage Approach to Medical Text classification with Feature Selection by Particle Swarm Optimisation. - Mahdi Abdollahi; Xiaoying Gao; Yi Mei 001; Shameek Ghosh; Jinyan Li 001; Michael Narag (KES, 2024)

Generating mutants of monotone affinity towards stronger protein complexes through adversarial learning. - Tian Lan; Shuquan Su; Pengyao Ping; Gyorgy Hutvagner; Tao Liu 031; Yi Pan 001; Jinyan Li 001 (Nat. Mac. Intell., 2024)