OP-Cluster: Clustering by Tendency in High Dimensional Space. - Jinze Liu; Wei Wang 010 (ICDM, 2003)

Gene Ontology Friendly Biclustering of Expression Profiles. - Jinze Liu; Wei Wang 010; Jiong Yang 001 (CSB, 2004)

Biclustering in Gene Expression Data by Tendency. - Jinze Liu; Jiong Yang 001; Wei Wang 010 (CSB, 2004)

Revealing True Subspace Clusters in High Dimensions. - Jinze Liu; Karl Strohmaier; Wei Wang 010 (ICDM, 2004)

A framework for ontology-driven subspace clustering. - Jinze Liu; Wei Wang 010; Jiong Yang 001 (KDD, 2004)

Mining Approximate Frequent Itemsets from Noisy Data. - Jinze Liu; Susan Paulsen; Wei Wang 010; Andrew B. Nobel; Jan F. Prins (ICDM, 2005)

Clustering pair-wise dissimilarity data into partially ordered sets. - Jinze Liu; Qi Zhang 025; Wei Wang 010; Leonard McMillan; Jan F. Prins (KDD, 2006)

UTS: An Unbalanced Tree Search Benchmark. - Stephen Olivier; Jun Huan; Jinze Liu; Jan F. Prins; James Dinan; P. Sadayappan; Chau-Wen Tseng (LCPC, 2006)

Mining Approximate Frequent Itemsets In the Presence of Noise: Algorithm and Analysis. - Jinze Liu; Susan Paulsen; Xing Sun; Wei Wang 010; Andrew B. Nobel; Jan F. Prins (SDM, 2006)

New approaches for clustering high dimensional data. - Jinze Liu (2006)

Incremental Subspace Clustering over Multiple Data Streams. - Qi Zhang 025; Jinze Liu; Wei Wang 010 (ICDM, 2007)

PoClustering: Lossless Clustering of Dissimilarity Data. - Jinze Liu; Qi Zhang 025; Wei Wang 010; Leonard McMillan; Jan F. Prins (SDM, 2007)

Functional Neighbors: Inferring Relationships between Non-Homologous Protein Families Using Family-Specific Packing Motifs. - Deepak Bandyopadhyay; Jun Huan; Jinze Liu; Jan F. Prins; Jack Snoeyink; Wei Wang 010; Alexander Tropsha (BIBM, 2008)

Approximate Clustering on Distributed Data Streams. - Qi Zhang 025; Jinze Liu; Wei Wang 010 (ICDE, 2008)

Mining Approximate Order Preserving Clusters in the Presence of Noise. - Mengsheng Zhang; Wei Wang 010; Jinze Liu (ICDE, 2008)

Unsupervised learning of high-order structural semantics from images. - Jizhou Gao; Yin Hu; Jinze Liu; Ruigang Yang (ICCV, 2009)

Privacy Preservation in Social Networks with Sensitive Edge Weights. - Lian Liu; Jie Wang 008; Jinze Liu; Jun Zhang 001 (SDM, 2009)

Bayes estimators for phylogenetic reconstruction - Peter Huggins; Wenbin Li; David Haws; Thomas Friedrich 004; Jinze Liu; Ruriko Yoshida (CoRR, 2009)

Approximation of Frequent Itemsets. - Jinze Liu (Encyclopedia of Database Systems, 2009)

A probabilistic framework for aligning paired-end RNA-seq data. - Yin Hu; Kai Wang; Xiaping He; Derek Y. Chiang; Jan F. Prins; Jinze Liu (Bioinform., 2010)

Analysis of equine protein-coding gene structure and expression by RNA-sequencing. - Stephen J. Coleman; Zheng Zeng; Jinze Liu; James N. MacLeod (BMC Bioinform., 2010)

Functional neighbors: inferring relationships between nonhomologous protein families using family-specific packing motifs. - Deepak Bandyopadhyay; Jun Huan; Jinze Liu; Jan F. Prins; Jack Snoeyink; Wei Wang 010; Alexander Tropsha (IEEE Trans. Inf. Technol. Biomed., 2010)

FDM: a graph-based statistical method to detect differential transcription using RNA-seq data. - Darshan Singh; Christian F. Orellana; Yin Hu; Corbin D. Jones; Yufeng Liu; Derek Y. Chiang; Jinze Liu; Jan F. Prins (Bioinform., 2011)

A Robust Method for Transcript Quantification with RNA-Seq Data. - Yan Huang 006; Yin Hu; Corbin D. Jones; James N. MacLeod; Derek Y. Chiang; Yufeng Liu; Jan F. Prins; Jinze Liu (J. Comput. Biol., 2013)

Piecing the puzzle together: a revisit to transcript reconstruction problem in RNA-seq. - Yan Huang 006; Yin Hu; Jinze Liu (BMC Bioinform., 2014)

DeepSplice: Deep classification of novel splice junctions revealed by RNA-seq. - Yi Zhang 078; Xinan Liu; James N. MacLeod; Jinze Liu (BIBM, 2016)

Whole mammogram image classification with convolutional neural networks. - Xiaofei Zhang; Yi Zhang 078; Erik Y. Han; Nathan Jacobs; Qiong Han; Xiaoqin Wang; Jinze Liu (BIBM, 2017)

TFmeta: A Machine Learning Approach to Uncover Transcription Factors Governing Metabolic Reprogramming. - Yi Zhang 078; Xiaofei Zhang; Andrew N. Lane; Teresa W.-M. Fan; Jinze Liu (BCB, 2018)

Toward data-driven identification of kingdom-specific protein sequence motifs. - Corrine F. Elliott; Kristin Linscott; Satrio Husodo; Joseph Chappell; Jinze Liu (BIBM, 2018)

Transfer deep learning mammography diagnostic model from public datasets to clinical practice: a comparison of model performance and mammography datasets. - Quan Chen; Jinze Liu; Kyle Luo; Xiaofei Zhang; Xiaoqin Wang (IWBI, 2018)

Adaptive software search toward users' customized requirements in GitHub. - Jinze Liu; Zhixing Li; Tao Wang 006; Yue Yu 001; Gang Yin (SEKE, 2018)

A novel data structure to support ultra-fast taxonomic classification of metagenomic sequences with k-mer signatures. - Xinan Liu; Ye Yu 001; Jinpeng Liu; Corrine F. Elliott; Chen Qian 001; Jinze Liu (Bioinform., 2018)

Approximation of Frequent Itemsets. - Jinze Liu (Encyclopedia of Database Systems (2nd ed.), 2018)

Hadoop-EDF: Large-scale Distributed Processing of Electrophysiological Signal Data in Hadoop MapReduce. - Yuanyuan Wu; Xiaojin Li; Jinze Liu; Licong Cui (BIBM, 2019)

Fault Diagnosis of Rod Pumping Wells Based on Support Vector Machine Optimized by Improved Chicken Swarm Optimization. - Jinze Liu; Jian Feng 001; Xianwen Gao (IEEE Access, 2019)

A Large-Gap Clone Detection Approach Using Sequence Alignment via Dynamic Parameter Optimization. - Jinze Liu; Tao Wang 006; Chenhui Feng; Huaimin Wang; Dongsheng Li 001 (IEEE Access, 2019)

HRV-Spark: Computing Heart Rate Variability Measures Using Apache Spark. - Xufeng Qu; Yuanyuan Wu; Jinze Liu; Licong Cui (BIBM, 2020)

NiCad+: Speeding the Detecting Process of NiCad. - Chenhui Feng; Tao Wang 006; Jinze Liu; Yang Zhang 026; Kele Xu; Yijie Wang 001 (SOSE, 2020)

Recent Shrinkage and Fragmentation of Bluegrass Landscape in Kentucky. - Bo Tao; Yanjun Yang; Jia Yang; Ray Smith; James Fox; Alex C. Ruane; Jinze Liu; Wei Ren 008 (Remote. Sens., 2020)

Inferring Gene Regulatory Networks of Metabolic Enzymes Using Gradient Boosted Trees. - Yi Zhang 078; Xiaofei Zhang; Andrew N. Lane; Teresa W.-M. Fan; Jinze Liu (IEEE J. Biomed. Health Informatics, 2020)

FastCount: a fast gene count software for single-cell RNA-seq data. - Jinpeng Liu; Xinan Liu; Ye Yu 001; Chi Wang 003; Jinze Liu (BCB, 2021)

Gazelle: transcript abundance query against large-scale RNA-seq experiments. - Xiaofei Zhang; Ye Yu 001; Chan Hee Mok; James N. MacLeod; Jinze Liu (BCB, 2021)

Speed Control of Pipeline Inner Detector Based on Interval Dynamic Matrix Control With Additional Margin. - Jian Feng 001; Jinze Liu; Huaguang Zhang (IEEE Trans. Ind. Electron., 2021)

Distributed MIMO MFAC-based consensus tracking strategy for multiagent systems with fixed and switching topologies. - Weizhao Song; Jian Feng 001; Jinze Liu (Int. J. Syst. Sci., 2022)

CLF-CBF Constraints for Real-Time Avoidance of Multiple Obstacles in Bipedal Locomotion and Navigation. - Jinze Liu; Minzhe Li; Jessy W. Grizzle; Jiunn-Kai Huang (IROS, 2023)

Realtime Safety Control for Bipedal Robots to Avoid Multiple Obstacles via CLF-CBF Constraints. - Jinze Liu; Minzhe Li; Jiunn-Kai Huang; Jessy W. Grizzle (CoRR, 2023)

Adaptive Dynamic Additional Margin With N-Level Hierarchy Optimization for Inner Detector Speed Control. - Jinze Liu; Jian Feng 001; Huaguang Zhang (IEEE Trans. Ind. Electron., 2023)

An adaptive tradeoff evolutionary algorithm with composite differential evolution for constrained multi-objective optimization. - Jian Feng 001; Shaoning Liu; Shengxiang Yang; Jun Zheng; Jinze Liu (Swarm Evol. Comput., 2023)

Dynamic Adaptive Hierarchical N-Level Hierarchy Optimization for Electric Power System Problems. - Jinze Liu; Jian Feng 001; Jiayue Sun; Huaguang Zhang (IEEE Trans. Circuits Syst. II Express Briefs, 2023)

Dynamic ε-multilevel hierarchy constraint optimization with adaptive boundary constraint handling technology. - Jinze Liu; Jian Feng 001; Shengxiang Yang; Huaguang Zhang; Shaoning Liu (Appl. Soft Comput., 2024)

scFed: federated learning for cell type classification with scRNA-seq. - Shuang Wang 002; Bochen Shen; Lanting Guo; Mengqi Shang; Jinze Liu; Qi Sun; Bairong Shen (Briefings Bioinform., 2024)

Environment Scan of Generative AI Infrastructure for Clinical and Translational Science. - Betina Idnay; Zihan Xu; William G. Adams; Mohammad Adibuzzaman; Nicholas R. Anderson 001; Neil Bahroos; Douglas S. Bell; Cody Bumgardner; Thomas R. Campion Jr.; Victor M. Castro; James J. Cimino; I. Glenn Cohen; et al. (CoRR, 2024)

Deciphering genomic codes using advanced NLP techniques: a scoping review. - Shuyan Cheng; Yishu Wei; Yiliang Zhou; Zihan Xu; Drew N. Wright; Jinze Liu; Yifan Peng 002 (CoRR, 2024)

N-Level Hierarchy-Based Optimal Control to Develop Therapeutic Strategies for Ecological Evolutionary Dynamics Systems. - Jinze Liu; Jiayue Sun; Huaguang Zhang; Shun Xu; Zifang Zou (IEEE Trans. Neural Networks Learn. Syst., 2024)

A novel multi-level hierarchy optimization algorithm for pipeline inner detector speed control. - Jinze Liu; Jian Feng 001; Huaguang Zhang; Shengxiang Yang (Neurocomputing, 2025)

Deciphering genomic codes using advanced natural language processing techniques: a scoping review. - Shuyan Cheng; Yishu Wei; Yiliang Zhou; Zihan Xu; Drew N. Wright; Jinze Liu; Yifan Peng 002 (J. Am. Medical Informatics Assoc., 2025)

Machine learning applications related to suicide in military and Veterans: A scoping literature review. - Yuhan Zhang; Yishu Wei; Yanshan Wang; Yunyu Xiao; Ronald K. Poropatich; Gretchen L. Haas; Yiye Zhang; Chunhua Weng; Jinze Liu; Lisa A. Brenner; James M. Bjork; Yifan Peng 002 (J. Biomed. Informatics, 2025)