Theory for trivial trajectory parallelization of multicanonical molecular dynamics and application to a polypeptide in water. - Jinzen Ikebe; Koji Umezawa; Narutoshi Kamiya; Takanori Sugihara; Yasushige Yonezawa; Yu Takano; Haruki Nakamura; Junichi Higo (J. Comput. Chem., 2011)

Adaptive lambda square dynamics simulation: An efficient conformational sampling method for biomolecules. - Jinzen Ikebe; Shun Sakuraba; Hidetoshi Kono (J. Comput. Chem., 2014)

H3 Histone Tail Conformation within the Nucleosome and the Impact of K14 Acetylation Studied Using Enhanced Sampling Simulation. - Jinzen Ikebe; Shun Sakuraba; Hidetoshi Kono (PLoS Comput. Biol., 2016)