Registration of multiple stained histological sections. - Jirí Borovec; Jan Kybic; Michael Busta; Carlos Ortiz-de-Solorzano; Arrate Muñoz-Barrutia (ISBI, 2013)

Automatic simultaneous segmentation and fast registration of histological images. - Jan Kybic; Jirí Borovec (ISBI, 2014)

Fast registration of segmented images by normal sampling. - Jan Kybic; Martin Dolejsi; Jirí Borovec (CVPR Workshops, 2015)

Binary Pattern Dictionary Learning for Gene Expression Representation in Drosophila Imaginal Discs. - Jirí Borovec; Jan Kybic (ACCV Workshops (2), 2016)

Detection and Localization of Drosophila Egg Chambers in Microscopy Images. - Jirí Borovec; Jan Kybic; Rodrigo Nava (MLMI@MICCAI, 2017)

Region growing using superpixels with learned shape prior. - Jirí Borovec; Jan Kybic; Akihiro Sugimoto (J. Electronic Imaging, 2017)

Supervised and unsupervised segmentation using superpixels, model estimation, and graph cut. - Jirí Borovec; Jan Svihlík; Jan Kybic; David Habart (J. Electronic Imaging, 2017)

Benchmarking of Image Registration Methods for Differently Stained Histological Slides. - Jirí Borovec; Arrate Muñoz-Barrutia; Jan Kybic (ICIP, 2018)

Fast Registration by Boundary Sampling and Linear Programming. - Jan Kybic; Jirí Borovec (MICCAI (1), 2018)

BIRL: Benchmark on Image Registration methods with Landmark validation. - Jirí Borovec (CoRR, 2019)

ANHIR: Automatic Non-Rigid Histological Image Registration Challenge. - Jirí Borovec; Jan Kybic; Ignacio Arganda-Carreras; Dmitry V. Sorokin; Gloria Bueno; Alexander V. Khvostikov; Spyridon Bakas; Eric I-Chao Chang; Stefan Heldmann; Kimmo Kartasalo; Leena Latonen; Johannes Lotz 002; et al. (IEEE Trans. Medical Imaging, 2020)

TorchMetrics - Measuring Reproducibility in PyTorch. - Nicki Skafte Detlefsen; Jirí Borovec; Justus Schock; Ananya Harsh Jha; Teddy Koker; Luca Di Liello; Daniel Stancl; Changsheng Quan; Maxim Grechkin; William Falcon (J. Open Source Softw., 2022)