Triplex: an R/Bioconductor package for identification and visualization of potential intramolecular triplex patterns in DNA sequences. - Jirí Hon; Tomás Martínek; Kamil Rajdl; Matej Lexa (Bioinform., 2013)

pqsfinder: an exhaustive and imperfection-tolerant search tool for potential quadruplex-forming sequences in R. - Jirí Hon; Tomás Martínek; Jaroslav Zendulka; Matej Lexa (Bioinform., 2017)

pqsfinder web: G-quadruplex prediction using optimized pqsfinder algorithm. - Dominika Labudová; Jirí Hon; Matej Lexa (Bioinform., 2020)

EnzymeMiner: automated mining of soluble enzymes with diverse structures, catalytic properties and stabilities. - Jirí Hon; Simeon Borko; Jan Stourac; Zbynek Prokop; Jaroslav Zendulka; David Bednar; Tomás Martínek; Jirí Damborský (Nucleic Acids Res., 2020)

SoluProt: prediction of soluble protein expression in Escherichia coli. - Jirí Hon; Martin Marusiak; Tomás Martínek; Antonin Kunka; Jaroslav Zendulka; David Bednar; Jirí Damborský (Bioinform., 2021)