BioNER-CFEM: Biomedical Named Entity Recognition Based on Character Feature Enhancement with Multimodal Method. - Jinzhong Ning; Jiru Li; Zhihao Yang; Yuanyuan Sun 002; Lei Wang 085; Yin Zhang 009; Hongfei Lin; Jian Wang 021 (BIBM, 2022)

Location-Guided Token Pair Tagger for Joint Biomedical Entity and Relation Extraction. - Yan Zhang; Jiru Li; Zhihao Yang; Hongfei Lin; Jian Wang 021 (BIBM, 2022)

Biomedical Document-level Relation Extraction with Coreference and Anaphor Graphs. - Jiru Li; Yuanyuan Sun 002; Zhihao Yang; Ling Luo 001; Lei Wang 085; Wei Liu; Yin Zhang 009; Bo Xu 009; Jian Wang 021; Yumeng Yang; Zhehuan Zhao; Hongfei Lin (BIBM, 2024)

Taiyi: a bilingual fine-tuned large language model for diverse biomedical tasks. - Ling Luo 001; Jinzhong Ning; Yingwen Zhao; Zhijun Wang; Zeyuan Ding; Peng Chen; Weiru Fu; Qinyu Han; Guangtao Xu; Yunzhi Qiu; Dinghao Pan; Jiru Li; et al. (J. Am. Medical Informatics Assoc., 2024)

The overview of the BioRED (Biomedical Relation Extraction Dataset) track at BioCreative VIII. - Rezarta Islamaj; Po-Ting Lai; Chih-Hsuan Wei; Ling Luo 001; Tiago Melo Almeida; Richard A. A. Jonker; Sofia I R. Conceição; Diana F. Sousa; Cong-Phuoc Phan; Jung-Hsien Chiang; Jiru Li; Dinghao Pan; et al. (Database J. Biol. Databases Curation, 2024)

JTIS: enhancing biomedical document-level relation extraction through joint training with intermediate steps. - Jiru Li; Dinghao Pan; Zhihao Yang; Yuanyuan Sun 002; Hongfei Lin; Jian Wang 021 (Database J. Biol. Databases Curation, 2024)

Prototype Tuning: A Meta-Learning Approach for Few-Shot Document-Level Relation Extraction with Large Language Models. - Dinghao Pan; Yuanyuan Sun 002; Bo Xu 009; Jiru Li; Zhihao Yang; Ling Luo 001; Hongfei Lin; Jian Wang 021 (NAACL (Findings), 2025)