3FunMap: full-sib family functional mapping of dynamic traits. - Chunfa Tong; Zhong Wang 001; Bo Zhang; Jisen Shi; Rongling Wu (Bioinform., 2011)

MVQTLCIM: composite interval mapping of multivariate traits in a hybrid F1 population of outbred species. - Fen-Xiang Liu; Chunfa Tong; Shentong Tao; Jiyan Wu; Yuhua Chen; Dan Yao; Huogen Li; Jisen Shi (BMC Bioinform., 2017)

RIdeogram: drawing SVG graphics to visualize and map genome-wide data on the idiograms. - Zhaodong Hao; Dekang Lv; Ying Ge; Jisen Shi; Dolf Weijers; Guangchuang Yu; Jinhui Chen (PeerJ Prepr., 2019)