Highly accurate and consistent method for prediction of helix and strand content from primary protein sequences. - Jishou Ruan; Kui Wang; Jie Yang; Lukasz A. Kurgan; Krzysztof J. Cios (Artif. Intell. Medicine, 2005)

Optimization of the Sliding Window Size for Protein Structure Prediction. - Ke Chen 003; Lukasz A. Kurgan; Jishou Ruan (CIBCB, 2006)

Super-fair Platforms Widely Hidden in Multinational Securities Business. - Jishou Ruan; Jun He; Qi Dai (JCIS, 2006)

SGA: A grammar-based alignment algorithm. - Guangyue Hu; Shiyi Shen; Jishou Ruan (Comput. Methods Programs Biomed., 2007)

SHEETSPAIR: A Database of Amino Acid Pairs in Protein Sheet Structures. - Ning Zhang 005; Jishou Ruan; Jie Wu; Tao Zhang 062 (Data Sci. J., 2007)

HuMiTar: A sequence-based method for prediction of human microRNA targets. - Jishou Ruan; Hanzhe Chen; Lukasz A. Kurgan; Ke Chen 003; Chunsheng Kang; Peiyu Pu (Algorithms Mol. Biol., 2008)

Accurate sequence-based prediction of catalytic residues. - Tuo Zhang; Hua Zhang 011; Ke Chen 003; Shiyi Shen; Jishou Ruan; Lukasz A. Kurgan (Bioinform., 2008)

Sequence based residue depth prediction using evolutionary information and predicted secondary structure. - Hua Zhang 011; Tuo Zhang; Ke Chen 003; Shiyi Shen; Jishou Ruan; Lukasz A. Kurgan (BMC Bioinform., 2008)

Prediction of protein structural class using novel evolutionary collocation-based sequence representation. - Ke Chen 003; Lukasz A. Kurgan; Jishou Ruan (J. Comput. Chem., 2008)

Preliminary study on the law of acupoints applied in moxibustion based on rough set method. - Xizhong Li; Zhongzheng Li; Yi Guo; Ping Li; Jishou Ruan; Chenguang Zheng (FSKD, 2010)

Desktop Software for Patch-Clamp Raw Binary Data Conversion and Preprocessing. - Ning Zhang 005; Yutao Tian; Lei Zhang; Zhuo Yang; Tao Zhang 062; Jishou Ruan (J. Electr. Comput. Eng., 2011)

Statistical Analysis of Terminal Extensions of Protein β-Strand Pairs. - Ning Zhang 005; Shan Gao; Lei Zhang; Jishou Ruan; Tao Zhang 062 (Adv. Bioinformatics, 2013)

Prediction of protein modification sites of gamma-carboxylation using position specific scoring matrices based evolutionary information. - Jianzhao Gao; Ning Zhang 005; Jishou Ruan (Comput. Biol. Chem., 2013)

Human structural proteome-wide characterization of Cyclosporine A targets. - Gang Hu; Kui Wang; Jody Groenendyk; Khaled H. Barakat; Marcin J. Mizianty; Jishou Ruan; Marek Michalak; Lukasz A. Kurgan (Bioinform., 2014)

newDNA-Prot: Prediction of DNA-binding proteins by employing support vector machine and a comprehensive sequence representation. - Yanping Zhang; Jun Xu 019; Wei Zheng 013; Chen Zhang; Xingye Qiu; Ke Chen 003; Jishou Ruan (Comput. Biol. Chem., 2014)

An ensemble method for prediction of conformational B-cell epitopes from antigen sequences. - Wei Zheng 013; Chen Zhang; Michelle Hanlon; Jishou Ruan; Jianzhao Gao (Comput. Biol. Chem., 2014)

Reweighted sparse subspace clustering. - Jun Xu 019; Kui Xu 004; Ke Chen 003; Jishou Ruan (Comput. Vis. Image Underst., 2015)

Identifying disease genes from PPI networks weighted by gene expression under different conditions. - Ping Luo 003; Li-Ping Tian 001; Jishou Ruan; Fang-Xiang Wu (BIBM, 2016)

PrAS: Prediction of amidation sites using multiple feature extraction. - Tong Wang; Wei Zheng 013; Qiqige Wuyun; Zhenfeng Wu; Jishou Ruan; Gang Hu; Jianzhao Gao (Comput. Biol. Chem., 2017)

Detecting distant-homology protein structures by aligning deep neural-network based contact maps. - Wei Zheng 013; Qiqige Wuyun; Yang Li 107; S. M. Mortuza; Chengxin Zhang; Robin Pearce; Jishou Ruan; Yang Zhang 040 (PLoS Comput. Biol., 2019)

Disease Gene Prediction by Integrating PPI Networks, Clinical RNA-Seq Data and OMIM Data. - Ping Luo 003; Li-Ping Tian 001; Jishou Ruan; Fang-Xiang Wu (IEEE ACM Trans. Comput. Biol. Bioinform., 2019)